KEGG   Oleidesulfovibrio alaskensis: Dde_3424
Entry
Dde_3424          CDS       T00294                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
dde  Oleidesulfovibrio alaskensis
Brite
KEGG Orthology (KO) [BR:dde00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:dde02048]
    Dde_3424
Enzymes [BR:dde01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Dde_3424
Prokaryotic defense system [BR:dde02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Dde_3424
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N T1R_D3-like ResIII DEAD Helicase_C SNF2-rel_dom RIP
Other DBs
NCBI-ProteinID: ABB40217
UniProt: Q30VS9
LinkDB
Position
complement(3385668..3388622)
AA seq 984 aa
MFNEENTVEQMVLDTLCGGVTSNMVAEELASYGGEIKGWRFVAAEELPRQHSDVLVESMV
RDALIRLNPEIKAQPDRADEVLYRLRTIPLSVQSEGLVRANELFAEWLRGEKSMPFGERG
EHTPVRLIDFENLSNNDYVVTNQWVYPIKEGGRRFDIIMLVNGIPLVVGEAKTPVRPAVT
WVDGASDIHNGYEQSVPQMFVPNVLSFATEGKCYRYGSVRMPIDIWGPWHEGENKAEGTL
ADVQRSIRSMLRPHVVLDILQNFTLFATDKKHRRIKIICRYQQYEGANLMVARVVKGYPK
KGLIWHFQGSGKSLLMVFAAQKLRMHRKLGNPTVMIVVDRIDLDTQITATFNAADIPNMI
GAATRQELQGLLAADTRKIIITTIHKFGEADGRLNERSNIIVMVDEAHRTQEGDLGRKMR
DALPNAFLFGLTGTPINKRDRNTFWAFGADEDEQGYMSRYSFQDSIRDKATLPLHFEAVD
VKLHINKDAIDEAYSQMTDELSELDRDDLAKRAAKMAVLIKAPARVNAICQHIVKHFQEK
VEPNGFKAQVVTFDRECCVLYKKAMDELVGPEASAIVMHTQGGKSDEYAEWKLAKDEEEK
LLDRFRDPNDPLKFLIVTSKLLTGFDAPILQVMYLDKPMKDHNLLQAICRTNRVYSGKTH
GLVVDYLGIFDDVATALDFDEKAVQKVITNLDDLKKELPGVVARCLAFFPGVDRTVGGYE
GLIAAQDCLPDNETRDKFAAEYSVLSRLWEALSPDPCLGLYEKDYKWLTQVYESVKPPSG
NGKLLWHALGAKTIELVHENVHLETVRDDLDTLVMDAEVLEGLLDAKDPDKKSKEIEIKL
IARLRKHKDNPKFVALGERLEKLKERHEQGLLHSLDFLKELLTLAREVVQAEKQVDPVDE
QAKAKAALTELFAEVKNGKTPMVIERIVTDIDEIVRLVRFPGWQNTKAGEREVQKALRKV
IYVKYQVKDQDLFDKAFGYIRQYY
NT seq 2955 nt   +upstreamnt  +downstreamnt
atgtttaacgaagaaaacacggtcgaacagatggtcctcgacacgctctgtggcggcgtg
acttcgaacatggttgccgaagagctcgccagctacggcggtgaaatcaagggctggcgc
ttcgtggccgccgaggagctgccccgtcagcactccgacgtgctggtggagtcgatggtg
cgcgacgccctcatccgcctgaacccggaaatcaaggcccagcccgaccgcgccgacgag
gtgctctatcgcctgcggaccattccgctgtctgtgcagagcgaaggcctggtgcgggcc
aacgagctgttcgccgaatggctgcggggcgaaaaatccatgcctttcggcgagcgcggc
gaacacacgccggtgcgcctgatcgacttcgagaatctcagcaacaacgattacgtggtc
accaatcagtgggtctacccgatcaaggaaggcggccgccgcttcgacatcatcatgctg
gtcaacggcatcccgctggtggtcggcgaggccaaaacgccggtgcgcccggcggtgacc
tgggtggacggggccagcgacattcacaacggctacgaacagagcgtgccacagatgttc
gtgcccaacgtcctctcctttgccaccgagggtaagtgctatcgctacggctcagtgcgc
atgcccatcgatatctgggggccgtggcacgagggcgagaacaaggccgaggggacgctt
gcggacgtgcagcgctccatccgctccatgctgcgcccccatgtggtgctggacatcctg
cagaatttcaccctgttcgccaccgacaagaagcaccggcgcatcaagatcatctgccgc
tatcagcagtacgaaggcgcgaacctgatggtggcccgcgtggtcaagggctatcccaag
aagggcctgatctggcatttccagggttcgggcaaatcgctgctgatggttttcgcggcg
cagaagctgcggatgcatcgcaaactcggaaaccccactgtgatgatcgtggtggaccgc
atcgatctggacacccagatcaccgccaccttcaatgccgccgatattccgaacatgatc
ggagccgccacccggcaggagctgcaaggcctgctggcggccgatacccgcaagatcatc
atcaccaccattcacaagttcggcgaggcggacggccgcctgaacgagcgctcgaacatc
atcgtgatggtggacgaggcgcaccgcacccaggaaggcgacttaggccgcaagatgcgc
gatgcgctgcccaacgcctttctctttggtctgaccggcacgccgattaacaagagggac
cgcaacaccttctgggccttcggcgcggacgaggatgagcagggctatatgagccgttac
tcgttccaggactcgatccgggacaaggccacgctgccgctgcatttcgaggcggtggac
gtgaagctgcatatcaacaaagacgccatcgacgaagcctactctcagatgaccgatgag
ctgagcgagctggatcgtgacgacctggccaagcgggccgccaagatggcggtgctgatc
aaggccccggcgcgggtgaacgccatctgccagcacatcgtcaagcacttccaggaaaag
gtggagccgaacggcttcaaggcccaggtggtgaccttcgaccgggaatgctgcgttctc
tacaagaaggccatggacgagctggtcggcccggaggccagcgccatcgtcatgcatacc
cagggcggaaagtccgacgagtacgcggaatggaaattggccaaggacgaggaggaaaag
ctcctcgaccgtttccgcgatccgaacgacccgctcaagttcctgattgtcacatccaag
ctgctgaccggcttcgatgcgcccattctgcaagtgatgtacctcgacaagccgatgaag
gatcacaacctgctgcaggccatctgccgtaccaaccgcgtctactccggcaagacccac
ggcctggtcgtggattacctgggcatcttcgatgacgtggccacggccctcgatttcgat
gaaaaggcggtgcagaaggtcatcaccaatttggatgacctcaagaaagagctgcccggc
gtggtggcaagatgcctggcgttcttccccggcgtggaccgaaccgtgggcggctacgag
gggctgatcgcggcgcaggactgcctgccggataacgagacccgggacaagttcgcggcg
gaatactcggtgctctcccggctgtgggaggcgctgtcgcccgatccctgtctcggcctt
tatgaaaaggactataagtggctgacccaggtctatgaatcggtgaagccgccgagcggc
aacggcaagcttctctggcacgccctgggggccaagaccatcgagctggtccatgaaaac
gtgcatctggagacggtgcgcgacgatctggacaccctggtgatggacgccgaggtcctc
gaagggctgctcgatgccaaggacccggacaagaaatccaaggaaatcgagatcaagctc
atcgcccgcctgcgcaagcacaaggacaatccgaagttcgtcgccttgggcgaacgcctc
gaaaagctcaaggaacggcacgaacagggcctgctccacagcctcgacttcctcaaggag
ttgctgaccctggccagggaggtcgtccaggccgagaagcaggtggacccggtcgatgaa
caggccaaggccaaagcggccctgaccgaactgttcgccgaggtgaagaacggcaagacg
ccgatggtgatcgagcggatcgtgaccgacatcgacgagatcgtgcgcctggtccggttc
cccggctggcaaaacaccaaagccggagagcgcgaggtccagaaggccctgcgcaaagtg
atttacgtgaagtaccaggtcaaggaccaggatctgttcgacaaggcgttcggatatatc
cggcagtactactga

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