Dechloromonas denitrificans: KI615_01830
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Entry
KI615_01830 CDS
T08301
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dden
Dechloromonas denitrificans
Pathway
dden03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dden00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KI615_01830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dden03021
]
KI615_01830 (rpoC)
03400 DNA repair and recombination proteins [BR:
dden03400
]
KI615_01830 (rpoC)
Enzymes [BR:
dden01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KI615_01830 (rpoC)
Transcription machinery [BR:
dden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KI615_01830 (rpoC)
DNA repair and recombination proteins [BR:
dden03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KI615_01830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UCV08291
LinkDB
All DBs
Position
374366..378577
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVTAEEEFDAITIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRDRMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMVSNLQRAQLLTEEQYLEMMEEHGDEFVAF
MGAEGIRELLRNLDLTSEVESLHAELEVTGSEAKNKKLAKRLKILEGFQKSGIKPDWMIL
EVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
QLKLHQCGLPKLMALELFKPFIFHKLEVLGYATTIKQAKKMVEGQEPVVWDILEDVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLSPANGQPIIVPSQDIVLGLYYATREKTNGKGEGMYFADIAEIERAMAA
KELDVQSRISVRLKQYEPAAVDGEWVEKIVRVETTAGRALLSKILPKGLPFKVIDRALKK
KEISKLIDESFRRCGLKETVIFADKLMQNGYALATRAGISFCSDDMLVPSKKYEIISAAE
AEVKEIEIQYTNGLVTNGERYNKVVDIWGRTGDQVAKVMMDELGHEDTIDRHGKKVKQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTQNGFVVKALVEGGEVIEPLRER
ILGRVTVDDLVDPETQETVIFAGTMLDEDLVDLIDKLGIDEVKVRTPLSCDTRYGLCAKC
YGRDLGRGMMVNAGEAIGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVASQIEAKSAGTI
RYTSNMRYVTSAKGEKVVISRSGEVLITDDHGRERERHKVPYGATLSVDEGKVVKAGAKL
STWDPHTRPIVTEYAGTVRFENVEEGVTVAKQVDDVTGLSTLVVIDHKRGGKAATKGIRP
VVKLLDESGQEVKITGSDHHVSIAFQVGSIISVVDGQQVGVGDVLARMPQESAKTRDITG
GLPRVAELFEARTPKDASVLAEFTGTISFGKDTKGKQRLVITDLDGTVHEFLIPKDKHVL
VHDGQVVNKGEKIVEGLPDPHDILRLQGVEALARYITDEVQDVYRLQGVKINDKHIEVIV
RQMLRRVAIVEPGDSKFIKSEQVERAELLAENDRMIAQGKLPATFDHMLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRKAQLAGED
IAAARALEPAAAENATQDADLGL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctattcaagcaggtaacggcggaagaggaatttgatgccatt
accattggcctcgcttcgcccgaaaagatccgttcctggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgcaccttcaagccggaacgcgatggcttgttctgcgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggccaaggttcgtcgtgac
cgcatgggtcacatcgagctggcctcgccgaccgcccacatctggttcctgaaatccttg
ccgtcccgtctcggtatggtgctcgacatgacgctgcgcgatatcgagcgcgtcctgtat
ttcgaagcctatgtcgtgactgatcccggcatggtcagcaacctccagcgtgcccaactg
ctcaccgaagagcagtatctggaaatgatggaagagcacggcgacgagttcgtcgcgttc
atgggtgccgaaggtatccgcgaactgctgcgcaacctcgatctgaccagcgaagtcgag
tctttgcatgccgaactggaagtgaccggttcggaagccaagaacaagaagctggccaag
cgcctgaagatccttgaaggcttccagaaatccggcatcaagccggactggatgattctt
gaagtcctgccggttctgccgccggatctgcgtccgctggttccgctcgacggcggccgc
ttcgcgacctccgatctgaacgacctctaccgtcgcgtcatcaaccggaataaccgtctg
aagcgtctgctcgagctgaaggcgccggaaatcatcgtccgcaacgaaaagcgcatgctg
caggagtcggtcgactcgctgctcgacaacggtcgtcgcggcaaggccatgaccggtgcc
aacaagcgtccgctgaagtcgctggccgacatgatcaagggcaagggcggtcgtttccgt
cagaacttgctcggtaagcgcgtcgactactccggccgttcggtcatcgtggtcggtccg
cagctcaagctgcaccagtgcggcctgcccaagctgatggccctggagctgttcaagccc
ttcatcttccacaagctggaagtgctcggctacgccaccaccatcaagcaagccaagaag
atggtcgaaggccaggaaccggtcgtctgggacatcctcgaagatgtcatccgcgaacat
ccggtcatgctgaaccgcgcgccgaccctgcaccgtctcggtatccaggctttcgagccg
accctgatcgaaggcaaggctatccagctgcacccgctcgtctgcgcggccttcaacgcc
gacttcgacggtgaccagatggctgttcacgtgccgctgtcccttgaagcccagatggaa
gcccgcacgctgatgctggcctccaacaatgtgctgtcgccggccaacggccagccgatc
atcgtgccgtcgcaggatatcgtgcttggtctgtactacgcgacccgcgaaaagaccaat
ggcaagggtgaaggcatgtactttgccgacatcgccgaaatcgaacgcgccatggccgcc
aaggaactcgacgtccagtcgcggatttcggttcgcctgaagcaatacgaaccggctgcg
gtggatggtgaatgggtcgagaaaatcgttcgcgtcgaaacgacggctggtcgtgcgctg
ctttccaagatcctgccgaaggggttgccgttcaaggttatcgaccgcgccctgaagaag
aaggaaatctccaagctgatcgacgaatccttccgtcgctgcggtttgaaggaaacggtt
atcttcgccgacaagctgatgcagaacggttatgccctggccacccgggccggcatttcc
ttctgttccgacgacatgttggtgccgagcaagaagtacgaaatcatttccgccgctgaa
gcggaagtgaaagaaatcgaaatccagtacaccaacggtctggtgaccaatggcgagcgt
tacaacaaggtcgtcgatatctggggccggaccggtgaccaggtcgccaaggtcatgatg
gacgaactcggccacgaggacaccatcgaccgccacggcaagaaggtcaagcaagagtcc
ttcaactccatctacatgatggccgactccggggctcgcggctctgctgcccagatccgt
cagctggctggtatgcgcggcctgatggcgaaaccggatggctcgattatcgagacgccg
attaccaccaacttccgcgaaggcctgaacgtcctccagtacttcatctcgacccacggt
gctcgtaagggcctggcagacacggcactgaagaccgccaactccggttacctgacccgc
cgtctggtggacgtgacgcaggatctggtcattaccgaagatgactgcggaacgcagaac
ggctttgtcgtcaaggccctggtcgaaggcggtgaggtcatcgaaccgttgcgcgagcgg
attctcggccgtgtcacggttgacgatctggtcgacccggaaacccaggaaaccgttatt
ttcgccggtaccatgctggacgaggatctggttgatctgatcgacaagttgggtatcgac
gaagtcaaggttcgcaccccgctttcctgcgatacccgctatggtctgtgtgccaagtgc
tacggtcgtgacctcggtcgcggcatgatggtcaatgccggcgaggccatcggcgttatc
gccgctcagtcgatcggcgagccgggtacccagctgaccatgcggactttccacgtcggc
ggcgcggcctcccgggctgctgttgcatcgcagattgaagccaaatcggccggtacgatt
cgctacacctcgaatatgcgttatgtgaccagtgccaagggcgagaaggttgtcatctcc
cgctccggtgaagtgctgattaccgacgaccatggtcgtgagcgcgagcgccacaaggtg
ccgtacggcgccacgctttccgtcgatgaaggcaaggtggtcaaggctggtgccaagttg
tcgacctgggatccgcacacccgtccgatcgttaccgaatatgccggtacggtccgcttc
gagaatgtcgaagagggcgtcaccgtcgccaagcaggtggacgatgttacggggctgtcg
actctcgtcgttatcgaccacaaacgtggtggcaaggctgccaccaagggtattcgtcca
gtggtcaagctgcttgatgaaagcggtcaggaagtgaagatcaccggcagcgaccaccat
gtgtcgatcgccttccaggttggctcgatcatctcggtggttgacggtcagcaggttggt
gtcggcgatgtgctggcccggatgccgcaggagtccgccaagacccgcgacattaccggc
ggtctgccgcgcgtcgccgagttgttcgaagcccggacgccgaaggatgcgtcagtgctg
gccgagttcaccgggactatcagcttcggcaaggacaccaagggcaaacagcgcttggtg
atcaccgatctcgacggtacggtccacgaattcctgattccgaaggacaagcatgtgctg
gtccatgacggtcaggtagtgaacaagggcgagaagatcgtcgaaggtctgcccgatccg
catgacattctccgtctgcagggggtcgaagcgctggcccgctatattaccgacgaagtc
caggacgtctatcgtctgcaaggcgtgaagatcaacgacaagcacattgaagtgattgtt
cgtcagatgctgcgtcgggtcgccatcgtcgagccgggtgatagcaagttcatcaagtcg
gaacaggtggagcgtgccgaactgctggccgaaaacgatcgcatgatcgcccagggcaag
ctgccggctaccttcgaccacatgttgctcggtattaccaaggcctcgctgtcgaccgat
tcgttcatctctgccgcgtccttccaggaaaccacgcgtgttctcaccgaggctgccatc
atgggcaagcgcgacgaactgcgtggcctcaaggaaaacgttatcgtcggacgcctcatt
ccggccggtaccggtcttgcctaccaccgcagccgcaaggctcagctggcgggtgaggac
atcgcagcggcaagggctctcgagccggctgctgcggaaaacgcaacgcaggatgccgat
ctgggcctgtaa
DBGET
integrated database retrieval system
