Dechloromonas denitrificans: KI615_17360
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Entry
KI615_17360 CDS
T08301
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dden
Dechloromonas denitrificans
Pathway
dden03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dden00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI615_17360 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dden03019
]
KI615_17360 (recQ)
03400 DNA repair and recombination proteins [BR:
dden03400
]
KI615_17360 (recQ)
Enzymes [BR:
dden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KI615_17360 (recQ)
Messenger RNA biogenesis [BR:
dden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI615_17360 (recQ)
DNA repair and recombination proteins [BR:
dden03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KI615_17360 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
UCV07151
LinkDB
All DBs
Position
3677487..3679370
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AA seq
627 aa
AA seq
DB search
MARPCAAKPSCRKNGRNPVATATMSQSSALQILRDVFGYPAFRGAQAEIIDHIGGGGDAL
VLMPTGGGKSLCYQIPALLRPGCAVVVSPLIALMQDQVDALTQLGVKAACLNSTLDWREA
QAVEQAIFSGNLDLVYIAPERLLLDRTLSMLDALDEAGKLALFAIDEAHCVSQWGHDFRP
EYLQLSALHERYPNVPRIALTATADQATRSEILIRLGLGEARVFLSSFDRPNIRYTVVEK
DNAKKQLLAFLAGRKGQAGIVYCLSRKKVEETAEWLSAQGYSALPYHAGLPVATRAANQR
RFLREEGLVMCATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGEPAEAWMTY
GMQDVALQHSRIAESGAGEGQKILESQRLTSLLAYCEAPRCRRQVLLNYFGEERAPCHNC
DVCQDPPELWDGTLAAQKALSAIFRTGMRFGVSHLTDILRGKATDKIKQWNHDQLPTFGV
GADLDEHAWKSVFRQLAAAGLVHVDMAEHGALQLTDAARLVLKGGQRVELRRPVKRKSSS
PSRSSTVVHSDLSAADEALFQTLRQWRSDTAREQGVPAYVILHDKTLRELAEVRPVSHGL
LAGITGMGSAKIEHYGEELLNLIRNEG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggccctgcgccgcgaagccatcctgccggaaaaacggtcgtaatccggtggcg
accgcaaccatgagccagtcgtccgcactgcagatcctgcgcgacgttttcggctacccc
gccttccgaggcgcccaggccgagatcatcgaccatatcggcggcggcggcgatgcactg
gtgctgatgccgaccggtggcggcaaaagcctgtgctaccagattcccgccctgctccgc
ccgggctgcgccgtcgtcgtctcgccgctgatcgcgctgatgcaggaccaggtcgatgcg
ctgacccagctcggcgtcaaggccgcctgcctcaattcgacgctcgactggcgggaggcg
caggccgtcgagcaggccattttcagtggcaatctcgacctcgtctatatcgcccccgaa
cgcctgctgctcgaccgcacgctgtcgatgctcgacgccctagacgaagccggcaaactg
gccctgtttgccatcgacgaggcgcactgcgtctcgcaatggggccacgatttccgcccg
gaatacctgcagctttccgccctgcacgaacgctacccgaacgtgccgcgcattgcgctg
accgccaccgccgaccaggcaacgcgcagcgaaatcctgatccgcctcggcctcggcgaa
gcgcgcgtcttcctgtccagtttcgaccgcccgaatatccgctacaccgtggtcgagaag
gacaatgcgaagaaacaattgctcgctttcctggccggccgcaaaggccaggccggcatc
gtctattgcctgtcgcgcaagaaggtcgaggaaaccgccgaatggttgtcggcccagggc
tactcggccctgccctaccacgccgggctgccggtcgcgacgcgggccgccaaccagcgc
cgcttcctgcgcgaagaagggctggtgatgtgcgccaccatcgccttcggcatgggcatc
gacaagccggatgtccgcttcgtcgcccacctcgatctgccgaagagcatcgaggcctat
taccaggaaaccggccgggccggtcgcgacggcgagccggccgaagcctggatgacctac
ggcatgcaggacgtcgcgctgcaacactcgcgcatcgccgaatcgggcgccggcgagggc
cagaaaatccttgagtcgcaacgcctgacctcgctgctcgcctattgcgaagccccccgc
tgccggcgccaggtcctgctcaactatttcggcgaagaacgcgcgccctgccacaactgc
gacgtctgccaggacccgccggaactgtgggatggcacactggccgcccagaaggcgctg
tcggccatcttccgcaccggcatgcgtttcggcgtcagccatctgaccgacatcctgcgc
ggcaaagcgaccgacaagatcaagcagtggaaccacgatcagctgccgaccttcggcgtc
ggcgccgatctcgacgagcatgcctggaaaagcgtcttccgccagttggcagcggccggc
ctggtccatgtcgacatggccgagcacggcgccctgcaactgaccgacgccgcccgcctg
gtgttgaagggcggccagcgcgtcgaactgcgccggccggtcaaacgcaagagcagcagc
ccgtcgcgcagcagcacagttgtgcacagcgacctgtcggcggccgacgaagcactgttc
cagaccttgcgccaatggcgcagcgataccgccagggaacaaggcgtaccggcctacgtc
atcctgcacgacaagaccttgcgcgaactggccgaagtccgtccggtcagccatggcctg
ctggccggcatcaccggcatgggcagcgccaagatcgagcactatggcgaagaactgctt
aacctgatccgcaacgagggctga
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