Dechloromonas denitrificans: KI615_20050
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Entry
KI615_20050 CDS
T08301
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dden
Dechloromonas denitrificans
Pathway
dden03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dden00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KI615_20050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dden03019
]
KI615_20050
Enzymes [BR:
dden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KI615_20050
Messenger RNA biogenesis [BR:
dden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KI615_20050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UCV10164
LinkDB
All DBs
Position
4258927..4260249
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AA seq
440 aa
AA seq
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MTFASLGLAAPLLQALETLGYQTPTPIQKQAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLAGAATPVGSNAVRALVLTPTRELAEQVHASFQQYGQHLPLRTYAAYGGVSINPQMMK
LRKGIDVLVATPGRLLDLYRQNAVKFGELQTLILDEADRMLDLGFSRELDAVFAALPKQR
QTLLFSATFSDEIRSMAKARLRDPLSIEVSPRNTAASSVKQWVIPVDKKLKPELFLHLLK
DRRWGQVLVFVKTRKGAELLVSTLQAKKIPADAIHGDKPQPARLRALEAFKAGEVQILVA
TDVAARGLDIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEAPLLAAIE
TLTKKTLEREEEPGFEPDHRVPMTNGAGQLVKKPKKPKVAGGRKPKNVPGNWVGFDAPAA
GPARRTAKPVAKAAGKPRAR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgcttcgctcggcctcgccgcccccctgcttcaggccctcgaaaccctcggc
taccagacgccgacgcccatccagaaacaggccatcccggccgtgctggccggccgcgac
ctgatggccgccgcccagactggcaccggcaagaccgccggtttcgcgctgccggtcctg
caacgactggccggcgcggccacgccggtcggcagcaatgccgtccgggcgctggtcctg
acgccgacgcgcgagctggccgaacaggtccatgccagttttcagcagtacggccagcat
ctgccgctgcgcacctacgcggcctacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcatcgatgtgctggtcgcgacgcccggccggctgctcgacctgtaccgg
cagaacgccgtcaagttcggcgaactgcagacgctgatcctcgacgaagccgatcgcatg
ctcgacctcggcttttcacgcgaactcgacgcggtgttcgcggcgctgcccaaacagcgg
cagaccctgctcttctccgccaccttctccgacgagatccgcagcatggccaaggcccgg
ctgcgcgatccgctgagcatcgaggtcagcccacgcaatacggcggcgagcagcgtcaag
caatgggttattccggtcgacaagaaactgaagccggaactcttcctgcatctgctgaaa
gatcgccgctggggccaggtgctggtcttcgtcaagacgcgcaagggcgccgagttgctg
gtcagcacgctgcaggcaaagaagatcccggccgacgcgatccacggcgacaagccgcaa
ccggcccggctgcgggcgctcgaagcgttcaaggcgggcgaagtgcagattctcgtcgcc
accgacgtcgccgcccgcgggctggacatcgacgatctgccgcaggtggtcaatttcgac
ctgccgatcgtcgccgaagactacattcaccggatcggccgcaccggccgggccggcgcc
accggcgaggcgatctcgctggtctgcgccgacgaggcaccgctgctcgccgccatcgaa
acgctgaccaagaagacgctggagcgcgaggaagagccgggtttcgagccggatcatcgc
gtgccgatgaccaacggcgccggtcaactggtcaagaaaccgaaaaagccgaaggtcgcc
ggcgggcgcaagccgaagaatgtgcccggcaactgggtcggcttcgatgccccggccgcc
ggaccggcgcggcgcaccgccaaaccggtcgccaaagcggcgggcaagccgcgcgctcgc
tga
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