Dechloromonas denitrificans: KI615_20400
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Entry
KI615_20400 CDS
T08301
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dden
Dechloromonas denitrificans
Brite
KEGG Orthology (KO) [BR:
dden00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dden03016
]
KI615_20400
Enzymes [BR:
dden01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KI615_20400
Transfer RNA biogenesis [BR:
dden03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KI615_20400
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UCV07710
LinkDB
All DBs
Position
complement(4324173..4326074)
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AA seq
633 aa
AA seq
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MNVLFEEDGGFKAGSIMADNDSSLQVEMPTGKRSKIKSATVLLRFEKPSAAALLEQAAPL
AEEIEPDFLWECVTDGEFSFLDFARDYYGHEPAPVEATAVLLAVHAAPVYFHRKGKGRFR
KAPPDILAAALASLEKKRQQALTMEGWIGELKEFRLPPEIGALSDALLYAPDRNKPETKA
FETACSDAGLSAAQMLFKCGAIKSAYFLHYRRFLHEQFPKGTGFPALEAPKLPTDLPRAD
VRAFSIDDAQTTEIDDALSVVKLPGIGSRIGIHIAAPGLAIEHGSPLDGVARARLSTVYM
PGNKITMLPDAVVQNYTLAGGVDCPAVSLYLTVNESLEVLSHESRLEMVHIAANLRHHEI
EPWFNAESIGGPLPDQPFKDELVHLWHFANACEGRRGKPSAMQGNNDYNFAIEGDLADPD
ACVVEISERKRGSPLDKLVAELMIVANSTWGGLLAEKNVACLYRAQTQGKVRMTTSPLPH
EGLGVPQYAWMTSPLRRYCDMVNQWQLIACLKGETPAFAQKSAELFGAMRDFEITYAAYA
DFQRQMERYWCLRWLQQHGITEVDATVRREQLVKIDHLPLLLRVPSLPGELPPGQRVHLA
VESLDLLAPEISCRFLSLLGENTPAEVVEEDEQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtattgtttgaagaagatggcggcttcaaggccggcagcataatggccgacaac
gacagctcgttgcaggtcgaaatgccgaccggcaagcgcagcaagatcaagtccgcaacg
gtattgttgcgttttgagaagccctcggcggctgccttgctcgaacaggccgcgccgctg
gccgaagagatcgaacccgatttcctgtgggagtgcgtcaccgatggcgaattttcgttt
cttgattttgcccgtgattactacggacacgaacccgccccggtcgaagcgacggcggtg
ctgcttgccgtgcacgccgcgcccgtctatttccaccgcaaaggcaagggccgcttccgc
aaggcgcctcccgacattctcgcagctgctctggccagtcttgaaaaaaagcgtcagcaa
gcgctcacgatggaaggctggattggcgagctgaaggaattccgcctgccgccggagatc
ggcgcgctgagcgatgccctgctttacgcgccggaccgcaacaagccggaaaccaaggcc
ttcgagacggcctgcagcgacgccggtctttcggcggcgcagatgttgttcaaatgcggc
gccatcaagtcggcctattttctccactatcgccgcttcctgcatgagcagttccccaag
ggcaccggttttccggcgctcgaggcgccgaagttgccgaccgacctgccacgcgccgac
gtgcgtgccttctcgatcgacgatgcgcagaccaccgagatcgacgacgcgctgtcggtc
gtcaagctgcccggcatcggctcgcgcatcggcatccacatcgcggcgcccggcctggcc
atcgaacacggttcgccgctcgacggcgtcgcccgtgcccggttgtcaacggtgtacatg
cccggcaacaagatcaccatgctgcccgacgccgtggtccagaactacacgctggccggc
ggcgtcgattgcccagcggtgtcgctctatctgaccgtcaacgagtcgctggaagtgctc
agccacgagtcgcggctggaaatggtgcatatcgccgccaacctgcgtcatcacgaaatc
gaaccgtggttcaacgccgaaagcatcggcggcccgttgcccgaccagccgttcaaggac
gagctggtgcacctgtggcacttcgccaatgcctgcgaaggccggcgtggcaagccgtcg
gcgatgcagggcaacaacgattacaacttcgccatcgagggcgatctggccgatccggat
gcctgcgtcgtggaaatttccgaacgcaagcgcggcagtccgctcgacaaactggtcgcc
gaactgatgatcgtcgccaactcgacctggggcggcctgctcgccgagaagaacgtcgcc
tgcctgtaccgcgcccagacccagggcaaggtgcggatgaccacctcgccgctgccgcac
gaaggcctcggcgtgccgcaatacgcctggatgacctcgccgctgcgccgttactgcgac
atggtcaatcaatggcaactgatcgcctgcctgaagggcgaaaccccggccttcgcccag
aaatcggccgaactgttcggggccatgcgcgatttcgaaattacctacgccgcctacgcc
gattttcagcgccagatggagcgctactggtgcctgcgctggctgcaacagcatggcatc
acggaggtcgacgcgacggtgcgccgcgagcagctggtcaagatcgaccatttgccgctg
ctgctgcgtgtgccctccttgcccggcgaattgccgcccggccagcgggtgcatctggcg
gtggaaagcctcgatctgcttgccccggagatcagctgtcgtttcctcagcctgctgggt
gaaaatactccggcggaggtcgttgaggaggacgagcagtga
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