Deferribacter desulfuricans: DEFDS_0004
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Entry
DEFDS_0004 CDS
T01188
Symbol
gyrA
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
ddf
Deferribacter desulfuricans
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddf03032
]
DEFDS_0004 (gyrA)
03400 DNA repair and recombination proteins [BR:
ddf03400
]
DEFDS_0004 (gyrA)
Enzymes [BR:
ddf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DEFDS_0004 (gyrA)
DNA replication proteins [BR:
ddf03032
]
Prokaryotic type
DNA Topoisomerases
DEFDS_0004 (gyrA)
DNA repair and recombination proteins [BR:
ddf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DEFDS_0004 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
DNA_pol3_delta
Phage_TTP_1
Motif
Other DBs
NCBI-ProteinID:
BAI79516
UniProt:
D3PA93
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All DBs
Position
4621..7029
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AA seq
802 aa
AA seq
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MKEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKP
YKKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRY
TEVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNI
PPHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKV
RAKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRI
VIELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVI
RRTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNRFELSDKQAQA
ILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSILNNKSVLMGIIKEELIDIKNKYGDER
RTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGKTGAGNVKEDF
IKDILVTTNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLISLDKDEKVAAMIST
KEFDRDRYIFMCTKEGIVKKTSLDAFSSGRSGIIAIKLRDGDEIVDASLISKNDSIFIST
RKGKCIQFNSSEVRNMGRNATGVKGITLTKDDKVVSMEAVKGDPLILTVTTKGFGKSSLI
TDYRIQSRGGKGIKLSKVTERTGEIVGARQVKLEDDVMLISKSSKVIRLSVSDIPILGRD
TQGVKLMGLDDEIISFDVIRED
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaaagggattatcgaagttaatatcgaagattctttaaaagatagttattta
gattatgctatgagtgtaatcataggtagggcactacctgatgtaagggatggtttaaaa
cctgttcatagaagagttttgtatgcaatgtatgaaatgggtgttttacacaataagcct
tataaaaaatcggcaagaattgtaggggatgtgataggtaaatatcaccctcacggtgat
tctgctgtttatgatacattggtaagaatggcacaagatttttcaatgagatatccattg
gtagatggtcagggaaattttggttccatagatggtgattcagccgctgccatgagatat
actgaagttaggatgaccaaaattgcagaagaaatgctttccgatattgataaagatact
gtggatttttcaccgaactatgacggttctttgaaagaacctgtagtacttcctactaga
ataccaaatatgcttataaatggaacaagtggtattgctgttggtatggcaacaaatata
cctcctcataatttaacagaagttatcgacgctttagtttatattatagataacccatca
aatacagatgaagaaattttaaattttataaaagggccggattttccaacatacggcata
atatacggtaaagatgagattttaaaagcatataaaacaggtaaaggcgtaataaaagta
agggcaaaggtaaagaaggaaataaccacaacaggtaaagaactcttagttgtgacagaa
cttccttatcaggtgaataaagctaatttaattgaaaaaatagctaatttagcaagagat
aaaaaaataaatgggattgttgatttaagagatgaatctgacagagatggtattcgtatt
gttatagagttaaaaagaggtgaaaatgcagatataataataaaccagttgtataaattt
acacaaatggaaattgcatacggtataaatcttgtgggtattgtaaataataaacctaag
actttaactttaagagatctattagaacagtttttagaacatagaaaagttgtagttata
agaagaacaaaatttttactaaaaaaagctgaagatagactgcatattttagaaggtttg
ataaaagcagttgagaatatagatgaagttgttgcgctgattaaaagttctaaaaatgcg
gcagaggcaaaagagaaactgatgaataggtttgaattatcagataaacaggctcaagct
attttagatatgaggctacacagattaactgggcttgaaattgaaaaacttagaaatgaa
tataaagaaacattaaaaaatattgaattttataagtctattttgaataacaagtcagtt
ttaatggggattataaaggaagaattaattgatattaaaaataaatatggggatgaaaga
agaacacaaattgtaaatagttcggaagaaataaatattgaagatctaattcctgatgat
gaagttgtagtaacactttcttatcaagggtttattaaacgtactccactatcaaacttt
aaatctcaaaaacgaggtggaaaagggaaaacaggtgccggtaatgtcaaagaagatttt
ataaaggatattcttgtaactacaaaccattccacattgatgttttttacaaacaaagga
agaattcattatttaaaggtttacgaattgccagagcttgctagagacgcaaagggtaag
tatattgcaaatttaatctccttagataaggatgaaaaagttgcagcgatgatttccact
aaagagtttgatagagataggtatatatttatgtgtactaaagaaggtattgttaaaaag
acatctcttgatgcttttagtagtggtagaagtggaattatcgctataaagcttagagat
ggggatgaaatagtagatgcttcattaatttctaaaaacgattctatctttatatccaca
agaaaaggtaaatgtattcagtttaacagctccgaagtaagaaatatgggtagaaatgct
actggtgtaaaagggataacgttgactaaagatgataaggtcgtttcaatggaagcggtc
aagggggatccacttattttaaccgttactacaaaaggatttggtaaatcttctttaatt
actgattatagaattcaatcaagaggtggtaaagggataaaattatcaaaggttacagaa
agaactggtgaaatagttggtgcaagacaggttaagttggaggatgatgtgatgctgatt
tccaagtcttcaaaggttataaggctctcagtttctgatattcctattttagggagagat
actcaaggtgtgaaattaatgggtcttgacgatgaaataatatcttttgatgtaataaga
gaggattaa
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