Deferribacter desulfuricans: DEFDS_0047
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Entry
DEFDS_0047 CDS
T01188
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03410
Base excision repair
ddf03430
Mismatch repair
ddf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DEFDS_0047 (recJ)
03430 Mismatch repair
DEFDS_0047 (recJ)
03440 Homologous recombination
DEFDS_0047 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddf03400
]
DEFDS_0047 (recJ)
DNA repair and recombination proteins [BR:
ddf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DEFDS_0047 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DEFDS_0047 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DEFDS_0047 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Cecropin
Haemadin
Motif
Other DBs
NCBI-ProteinID:
BAI79559
UniProt:
D3PAD6
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All DBs
Position
53431..55179
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AA seq
582 aa
AA seq
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MLKEIGETVKYKWLIEEVNIEKLFDLIDKWRLPLPIGVTLFKRGILTSDDLHAFFNTPLQ
SLKNPFHMKDMEKAVRRVYEAIISGEKICVYGDYDVDGVTSTALIYLFLKEVGANVGYYI
PNRIEEGYGLNKEAINELRARGVELLITVDCGITALDEIKFAKNIGMDVIITDHHKPLES
LPEAHSILNPLQPGDEYKFKHLSGVGVAFKFIMALRYSLSLNNFFKDKIPNLKKYLDIVA
LGTIADVVPMVDENRIFVKHGLKVLSKKDVRIGLQELKRVTGLLNTNIEVSHVGYVLAPR
INAVGRLGESDRGVKLLITKNKNEARWLAEELDIENRYRQEMEKKILNDTFNKIEKLGLA
NKYAGMVLFSDRWHPGIIGIVASRVAEKYNKPTIVISVENGIGKGSARSISDFHLYDCLQ
ELSDLFLKFGGHKYAAGLQLYERDIKVLQKRFHELVRKYRDVGSEKSSIVIDAIVEPKDI
NMDLMNWIERMKPFGQGNPEPVFCLKRVRKYQQFGFTGRDRSHVRGFVEKDGYIFEIVGY
NMKEYKYFLKNYDKFDILFTPEINQWFGDRSILLKIKDFKRA
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaagaaataggtgaaacagtaaaatataaatggctgattgaagaggtaaatatt
gagaaactctttgatcttattgataagtggcgactacctctacctatcggtgtaactttg
tttaaaagagggatactaacatctgatgatctgcacgcttttttcaatacacctttgcag
agtcttaaaaacccttttcatatgaaagatatggaaaaagctgtaagaagggtttatgaa
gctatcatttctggtgaaaagatttgtgtatatggcgattatgatgttgatggtgttact
tcaactgcacttatctacctctttttaaaagaagtaggagcaaatgtgggttattatatc
ccaaatagaattgaagaagggtatggcttaaataaagaggctatcaatgaactgagagct
agaggtgttgagttattaattacagttgattgtggaataacggcattagatgaaataaaa
tttgcgaaaaacattggtatggatgtaatcataacagatcatcataagcctcttgaaagt
ttacctgaagctcacagcatcctaaaccctttacaacctggagatgagtataagtttaaa
catctatcaggtgttggtgtagcatttaagtttataatggctttgagatattctttatct
ttaaataatttttttaaagataagatacccaacttgaaaaaatatcttgatatagtggct
cttgggacaattgcagatgtggttcctatggttgatgaaaatagaatctttgtaaaacat
ggactaaaagttttatctaagaaagatgttaggatcggattacaagagctaaagcgtgtt
acagggcttttgaatactaacattgaagtatcccatgttggctatgtgttagcaccaaga
ataaatgctgttggaagattgggggaaagcgatagaggggtaaaattattaattactaaa
aataaaaatgaagcaagatggcttgctgaagaattagatatagaaaatagatatcgtcaa
gaaatggaaaagaaaatattaaatgatacctttaataaaattgaaaaattaggacttgca
aataaatatgcaggaatggttttattttcagatagatggcatcctgggattattggcata
gtggcttcaagagttgcagaaaaatataataaaccaaccattgtgatttcagtggaaaac
ggaatagggaaaggttctgcaagaagtatatctgatttccatctatatgattgtttacaa
gagctgtcggatctttttttgaaatttggagggcataaatatgctgctggattacagctt
tatgaaagagatattaaggtattacaaaaaagatttcatgagttggtaaggaaatataga
gatgtaggttctgaaaagtcttctattgtgatagatgcaattgtagagcccaaagatatt
aatatggatttgatgaactggatagagagaatgaaaccttttggacaaggaaatcctgaa
cctgttttttgtttaaaaagggttagaaagtaccagcagtttggttttacaggtagggat
agaagccatgttcgtggttttgttgaaaaagatgggtatatttttgagattgttggttat
aatatgaaagaatataaatattttttgaaaaattatgataaatttgatattttattcacc
ccagaaattaatcagtggtttggggatagatcgatattattgaagattaaggattttaaa
agagcataa
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