Deferribacter desulfuricans: DEFDS_0222
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Entry
DEFDS_0222 CDS
T01188
Symbol
trmA
Name
(GenBank) tRNA (uracil-5-)-methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ddf
Deferribacter desulfuricans
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ddf03009
]
DEFDS_0222 (trmA)
Enzymes [BR:
ddf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DEFDS_0222 (trmA)
Ribosome biogenesis [BR:
ddf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DEFDS_0222 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
RrnaAD
TRAM
Cons_hypoth95
Methyltransf_31
DUF5884
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
BAI79733
UniProt:
D3PAW0
LinkDB
All DBs
Position
223899..225080
Genome browser
AA seq
393 aa
AA seq
DB search
MIYKNVEIIDTAYGGYGVAKVDGGFTVFIPQTVEGDVVDFEIFEKKKTHSFAKLIKIHKP
SKLRREFPCKFFNECGGCQFGHIDYDYQIEIKKRLINNFFRKVEGFKIDSVITSPEFRYR
FRATFRLKNGKFGFLGFKSNKFIPITDCLICKETVVEKISKIANEYKGSEINKCYIIENE
KGEALLNTDIKLGNLEDFKDIIGLKTKNKILGDSLLKIDVGDFYYYVGFDSFSQSNRFLL
REFAEVVVSFVDENDSVLELYAGSGFFTHKVAKKAKAVLAIEENREAISLLKKLNVENVD
IIYSKAENIKRIDINPYNTLLVDPPRTGLSKPVIDAISNRFEKIVYVSCNPSTMARDILR
LSNNYDLKKYLFIDMFPNTYHIESIALLERKEG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgatttataaaaatgttgagattatagataccgcttatggtggctatggcgtagcaaag
gttgatggcggttttacagtttttattcctcaaacagttgaaggggatgtagtagatttt
gaaatatttgaaaaaaagaaaacccattctttcgctaaactgatcaaaattcataagcct
tcaaaattaagaagagagttcccttgtaaattttttaatgaatgtggcggatgtcaattt
ggccatatcgattatgattaccaaatcgaaataaaaaagagattaattaacaactttttt
agaaaggtagaagggtttaagattgatagtgtaattacttcgccagagtttagatacagg
tttagagctacttttaggctaaaaaatggtaaatttggttttttaggttttaaaagtaat
aaatttatccctattaccgactgtcttatttgcaaagaaacagttgtagagaagatatca
aaaatcgcaaatgaatataaaggtagtgagattaataagtgttatattattgaaaatgaa
aaaggtgaagctttgttaaatactgatattaaattgggaaatttggaggattttaaagat
attataggattaaaaactaaaaataagattttaggggatagtttactaaaaatagatgtg
ggtgatttttattattatgtaggatttgattcttttagtcagtcaaatagatttttgttg
agagagtttgctgaggtagttgttagttttgtagatgaaaatgattctgtcttagagtta
tatgctggaagtggcttttttactcataaagttgctaaaaaagcaaaagctgtattggcc
attgaagaaaatagagaagctattagtttgttgaaaaagttgaatgttgaaaatgttgat
ataatttacagtaaagcagaaaatataaaaaggatagatattaacccttataatacacta
ttggttgatccaccaagaactgggctttcaaaacctgtaattgatgctatttcaaacaga
tttgaaaaaatagtttatgtatcctgcaacccttccacaatggctagagacattttaagg
ctttctaataattacgatctgaaaaaatatctgtttatagatatgtttccaaatacttat
catattgaaagtatagctttattagaaagaaaagagggataa
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