Deferribacter desulfuricans: DEFDS_0229
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Entry
DEFDS_0229 CDS
T01188
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DEFDS_0229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddf03400
]
DEFDS_0229
Enzymes [BR:
ddf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DEFDS_0229
DNA repair and recombination proteins [BR:
ddf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DEFDS_0229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
SNF2-rel_dom
RecG_dom3_C
Cas3-like_C_2
AAA_22
UB2H
DnaGprimase_HBD
MurD_N
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BAI79740
UniProt:
D3PAW7
LinkDB
All DBs
Position
231622..234957
Genome browser
AA seq
1111 aa
AA seq
DB search
MDRSVFSSLWGSSKSFLLRMLLKESQNSSLIICENRNEMEKVVQELNFFLPDTEILSFPE
YTHEPFDEVKIESNILSERVTSLKKLITDNDQKVVVGTFYSILKKIFSKSDFKNSIYSLK
VGDSISFDELRYILGYLGYVEVEYVGDKGEFIQRGDFFEIFLIDKEYPVRCEFFDDELEA
IYYFDPVTIKKVKDVDAIDILPANEILCDEEDLIKNIKDETVRERIKEFGKFAGVHWYAP
YVQKLTPFWEYLGEVESVYFLGDGFQNKIENYFDYLLDKFEESHHFYNYKEIFASKNELE
AFLDKHEFVILSEVDESSEKLPFRVSSSINFFTPEGTNVYNNAERFIDRLKSLIKDGYSA
VISFNNKRFKEIFTQFLKEHEIAFVEGSKFYDLDKCGVLIIDANFSGGFISENYKLAVFT
DYEIFGFQKKAKKTKKKEVFKTNISDLEEGDYVVHVDYGIGIYRGIENKEIGGIKGDYIK
VEFENGENLYIPISNIGLLQKYIGTKGGTPKLSNLQSNRWKKLKEQAYKSAKKLAVDILK
IYAERKSRRGFAFTKSGEILKTVELRFPYEETEDQIVVINEVFNDMESETPMERLVCGDV
GFGKTEVAIRAAAKAVENYKQVAILAPTTVLVRQHYQNFIERFKDMPVEIDYISRFKTSR
EIKRALERLKKGEIDIIIGTHRLLSKDVEFYDLGLLIVDEEQRFGVNHKEKIKALKSNID
VLTLTATPIPRTLQLSLSGLRDMSIINTPPQDREPVSIKIIKNDEELNNAILKELKRGGQ
VYFLHNKVEDIEKIAYMLKEKFPLSNTSIAHGQMDAKVLDEVFEKFYQGDVDILVCTTII
ENGLDIANANTIVINNAHTFGLAQLYQLKGRVGRGNKRGYCYLRIPQNAKINEVARKRLK
IISQLSDLGSGFKISTYDLQIRGAGDLLGAEQSGFVVNVGYELYVQMINEAINELKGHKT
DLNKTEINSNFPHYIPASYIPSHRERIEYYRKISKLITKEDIDNIKEDLSVFYGDIPEET
MNLIYLMCLKNIFSVLGVKTATFFKNSVNMVFLDKNDFDVNIFLSKLKNNDKLVANFKNG
NIMSIVYKGEESFLVALFSFFEDYMRVAEKV
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatagatctgttttttcgtcactttggggatcatcaaaatcatttttattaaggatg
ttacttaaagaaagtcaaaatagcagtcttattatctgtgaaaacagaaatgaaatggaa
aaagttgttcaggagttaaacttttttttgccagatacggaaatattgagttttccagaa
tacacacatgagccttttgatgaagtaaagattgaatcaaatattttatcagaaagggta
acatctctaaaaaagttgataactgataatgatcaaaaggttgttgttggaacattctat
tcaattttaaaaaaaattttttctaaaagtgattttaaaaattccatttattcattgaaa
gttggagatagtatcagttttgatgagctaagatatattttaggatatttaggatatgtt
gaagttgaatatgtaggggataaaggggaatttatacaaagaggcgatttttttgagatt
ttccttatagacaaggaatatcctgtaagatgtgagttttttgatgatgaattagaagct
atttattattttgatcctgtgacaataaaaaaggtaaaagatgttgatgctattgatatt
ttacctgcaaatgagattttatgtgatgaagaggatttaataaaaaatattaaagatgaa
acagtaagagaaagaattaaagaatttggtaaatttgccggtgttcattggtatgcccct
tatgtacaaaagcttacccctttttgggaatacttgggggaagttgaatcagtttatttt
ttaggggatggttttcaaaataaaatagaaaattattttgattaccttttagataaattt
gaggaatctcatcatttttataattataaagaaatttttgcttctaaaaatgaattagaa
gcatttttggataaacatgagtttgttatattaagtgaagttgatgagagctcagaaaaa
ctcccctttagagtatcttcctctattaatttttttacacctgaagggacaaatgtttat
aacaatgctgaaaggtttatcgataggctaaaaagcttaataaaagatggatattctgct
gttatttcttttaataataagcggtttaaagaaatttttacacaatttttgaaagagcat
gaaatagcatttgttgaggggagtaaattttacgatttagataaatgtggtgttttgata
attgatgcaaacttttcaggtggttttatcagcgaaaactataagttggctgtttttacg
gattatgagatattcggttttcaaaagaaagcaaaaaaaactaagaaaaaagaggtattt
aagaccaatatctctgatttagaagaaggggattatgtagttcatgttgattatggtatt
ggaatatatcgaggtattgaaaataaagagataggtgggataaagggagattatataaaa
gtagaatttgaaaatggggaaaacctttatatacctatttcaaatattggacttttgcaa
aaatatatcggtacaaaaggtggtactccaaagctgagcaaccttcagtcaaatagatgg
aaaaaattaaaagagcaggcatataaaagtgctaaaaaactcgctgttgatattttaaaa
atttatgcggagagaaagagtaggagaggttttgcttttacaaagagtggggagatttta
aaaacggttgaacttagatttccttatgaagaaacagaggatcaaatagttgttatcaat
gaagtatttaatgatatggaaagtgaaacccctatggaaagactcgtttgtggagatgtg
ggctttggaaagacagaggtggcaataagggcagctgcaaaagctgtggaaaattataag
caggtagcgattttggctccaacgactgttttagtaagacagcactatcaaaatttcata
gaaagatttaaagatatgcctgttgaaatagattatatttcgagatttaaaacatcaaga
gagataaaaagggctctggaaaggttaaaaaaaggggagatagatataattatagggaca
catagattgctttctaaagatgtagaattttatgatttaggtttactaattgtggatgag
gagcagcgttttggtgtaaatcataaagagaaaataaaggcattaaaaagtaatatagat
gttttgacattgacagccacaccaattccaagaacattacagctttctctaagcggttta
agggatatgagcataattaacactcctccgcaagatagagaacctgtttcgataaagatt
attaaaaacgatgaagagttaaataatgcaattttaaaagaattaaaaaggggtgggcag
gtctattttttacataataaagttgaagatatagaaaaaatagcctatatgctcaaagaa
aaattcccactatcaaatacttctattgcacatgggcagatggatgcaaaagtgttagat
gaggtctttgaaaagttttatcaaggtgatgtggatattttggtatgtacaacaattatc
gaaaatggtcttgatatagcaaatgcaaatacaattgttataaataatgctcacaccttt
gggcttgctcagctttatcaattgaaagggagagttggtaggggtaataagagagggtat
tgttatttacgaattcctcaaaatgcaaaaatcaatgaagtggcaaggaaaaggttaaaa
atcataagccaactgtctgatttaggtagtggttttaagatttcaacttatgatttacag
attagaggtgctggagatctgttaggtgcagagcaatcaggttttgtggtaaatgttggt
tatgagctttatgtgcagatgataaatgaagcgataaatgagttaaaagggcataaaact
gatttaaataaaactgagataaattctaatttccctcattatatccccgcatcttatatc
ccttcacacagagagagaatagaatactatagaaagatttctaaactaataactaaggaa
gacatcgataacataaaagaggatttatctgttttttatggagacataccagaagagaca
atgaacttaatttatttaatgtgtttgaaaaatatattttcggttttaggtgttaaaacg
gcaacattttttaaaaatagcgttaatatggtttttcttgataaaaatgattttgacgta
aatattttcttatcaaaattaaaaaataatgataagttagtggcaaactttaagaacggt
aatataatgagtattgtttataaaggggaggaaagttttttggtagcgctgtttagcttt
tttgaagattatatgagagttgctgaaaaggtatga
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