Deferribacter desulfuricans: DEFDS_0659
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Entry
DEFDS_0659 CDS
T01188
Name
(GenBank) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEFDS_0659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddf03019
]
DEFDS_0659
03016 Transfer RNA biogenesis [BR:
ddf03016
]
DEFDS_0659
Enzymes [BR:
ddf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DEFDS_0659
Messenger RNA biogenesis [BR:
ddf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DEFDS_0659
Transfer RNA biogenesis [BR:
ddf03016
]
Prokaryotic type
tRNA degradation factors
DEFDS_0659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_RNR_1st
S1
OB_Dis3
S1CSD-TOTE-2
WHD_TBPIP
Rrp44_S1
TFIIE_beta
TRAM
VD10_N
Motif
Other DBs
NCBI-ProteinID:
BAI80139
UniProt:
D3PC16
LinkDB
All DBs
Position
complement(631748..633823)
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AA seq
691 aa
AA seq
DB search
MNNNIEKQILNFLKNSKKPLSFNAILNNVSIEKKLLRKILRKLIIQGDIIKFKTGKYAPC
DDLGIIKGTIDGHPDGYAFLVPEDKELDDLFIPPKKLNGAVHGDKVTAKIVEFRGKKEAH
VIKVVERGFKKVVGRVEKSKYFAYVIPYEKKFFYDIYIPNKYAKKLKDDDVVVCEIIKYP
TNGKNPEGRIKKVLGNIYDKGIENKIVLAKYDLKINFPKSVKKEVKETATTLYSNPGKRT
DFTKLFTVTIDGEDARDFDDAISIEITKQGYILYLHIADVAHFVRAGTNLDKEAYNRGTS
VYFPEFAIPMLPEKLSNDLCSLMPEKKRLTLTVKIEYDKNGNRIKSEIFQSIIKSNYRLT
YNYVNDIIEGNETTKDKKLLNLINLSKELTEKLIAKRKRIGMIDFDLPEAVFKFDDDGNL
IDIVPFERKLSHKIIENFMIEANEAVAEFLEENSPVSVFRVHDYPDPKKIKEFIKLCHYF
GIDVYEPEEITPEAVQELADKVANSKFGYVLSSTLVRTMQKAVYSIDNIGHFGLASKSYT
HFTSPIRRYPDLLVHRILKTLLFKYDYKINKEYLKKAAEHSSAREQNAESAEREIHQYKK
LKFLLENREKTYDAFINRISSNGFFIFIEKLLLTGFVHLSSLENDFYIVDLESNSVIAKG
SGRKYKIGDIVKVKLDKVNFDHLEADFTLVE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
ttgaataataacatagaaaaacagatactaaacttcctgaaaaattcaaaaaaaccacta
agcttcaatgcgatactaaacaatgttagtatagaaaaaaaacttttaagaaaaatatta
agaaaattaattatacaaggcgatattatcaaatttaaaacaggtaaatatgcaccatgt
gatgatttgggtataataaaagggacaattgacggacatcctgatggttatgcattttta
gtccctgaagacaaagaattagatgacctatttattccaccaaaaaaattaaatggagca
gtacacggagataaagttaccgctaaaattgttgaatttcgtggtaaaaaagaagcacat
gtaattaaggttgtagaaagaggatttaaaaaggtagttggacgtgtagaaaagtcaaaa
tattttgcatatgtaatcccttacgaaaaaaaattcttttatgatatctatatccccaat
aaatatgcaaaaaagttgaaagacgatgatgttgtagtttgtgaaataataaaatacccc
acaaatgggaaaaatccagaagggcgaataaaaaaggttcttggcaacatctatgataaa
ggtatagaaaataagatagttcttgcaaaatatgatttaaaaataaattttccaaaatct
gtcaaaaaagaggttaaagaaactgctacaaccctttactcaaatccaggtaagagaacc
gattttacaaaacttttcacggttaccattgatggagaagatgcaagagattttgatgat
gcaatttcaatagaaataactaagcaaggctatattctttatcttcatattgctgatgtg
gctcactttgtaagagctggtacaaatttagacaaagaagcatacaacagaggaacaagc
gtctattttccagaatttgcaatccctatgttaccagaaaaactttccaacgacctatgc
tctctcatgccagaaaaaaagagattaacacttacagtaaaaattgaatatgataagaat
ggtaacagaataaaatctgagattttccaatctattataaaaagtaactacaggcttact
tataattatgtaaatgatataatagaaggtaacgaaacaacaaaagataaaaagttatta
aatcttattaatctaagtaaggaattaaccgagaaattaattgcaaagcgtaaaagaatc
ggaatgatagattttgatcttcctgaagctgtatttaaatttgatgatgatggaaactta
atagatattgtcccttttgaaagaaaactttcgcacaaaattattgaaaactttatgata
gaagcaaatgaagctgtagcagaatttttagaagaaaattccccagtttccgtctttaga
gtacatgattaccccgatccgaaaaaaattaaagaatttattaaattgtgtcactatttt
ggtatcgatgtctatgagccagaggagattactcctgaagcagttcaagaattggctgat
aaggttgcaaactcaaaatttggatatgttctttcatccactcttgtgaggactatgcaa
aaagctgtgtattcaattgataatattggtcatttcggtttagcatcaaaatcgtatacg
cattttacaagtccaataagaagataccctgatttattagtccacaggattttaaaaaca
cttctatttaaatatgactacaaaataaacaaagagtatcttaaaaaggcagctgaacac
tcttcagcaagagagcaaaatgcggaatccgcagaaagagaaatacatcaatacaaaaaa
cttaaattcttactcgaaaatcgtgaaaaaacttatgatgcattcattaatagaatctca
tcaaacggtttcttcatatttatagaaaaactgttattaacaggttttgtacatctttcc
tctcttgaaaacgatttctatatagtagatttagaatcaaattctgtgattgcaaaaggt
tcagggagaaaatataaaattggtgatattgtcaaagtaaaacttgataaagtaaatttt
gaccatttagaagcagactttacgttagtagaatag
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