Deferribacter desulfuricans: DEFDS_1520
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Entry
DEFDS_1520 CDS
T01188
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEFDS_1520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddf03019
]
DEFDS_1520
03016 Transfer RNA biogenesis [BR:
ddf03016
]
DEFDS_1520
Enzymes [BR:
ddf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DEFDS_1520
Messenger RNA biogenesis [BR:
ddf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DEFDS_1520
Transfer RNA biogenesis [BR:
ddf03016
]
Prokaryotic type
tRNA degradation factors
DEFDS_1520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
S1_2
MazG
KH_5
GldM_4th
Motif
Other DBs
NCBI-ProteinID:
BAI80980
UniProt:
D3PEF7
LinkDB
All DBs
Position
complement(1540602..1542704)
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AA seq
700 aa
AA seq
DB search
MEKKIFNYEVKLTEDSEPIIFETGWKAKQANGSIWIKQGGSVVLVTAVASKEASENLDFF
PLTVNYIEKFYAVGKIPGGFIKREGKPSDKETLISRLIDRPIRPLFPEGFRNETQIIATV
VSSDQVNSTDILALNAASAALMISDIPFEGPIGAVRVGKINGEYVINPSAAIFDDLEMNI
VVAGTEDSIVMVEAGMKNCSEEDVVNALEFGHEAIKKLVEVQKRMRDEIGKEKFEYMDFS
VSEDDLNKLYDEIGDKLKEAVLIPGKLEKYEAIDKVKEEYFEKLKEELGDEFEENKGYYN
ELYQEVEKKVFRDITLNSGKRVDGRTYTEIRPIDIEVDLLPCAHGSALFTRGETQALVTA
TLGTKFDSQLLDDLEGETYKRFMLHYNFPPFSVGEIGFLRAPGRREIGHGFLAERALASM
LPGEDEFPYTIRVVSEILESNGSSSMATVCGGSLALMDAGVPIKDVVAGIAMGLIYEGDD
NYVILSDIMGIEDHLGDMDFKVTGTETGITALQMDIKIKGLKREILEKALAQAKEGRLFI
LQKMKAVLAKPREEVSPKAPRFVKVKINPEKVGLLIGPAGKTIKSIIDKTGVKIDILEEG
ELHIFGNNKEAIDSAIEMIEAVTQELTVGKIYNAKVKRVVDYGAFVELFPGVEGLLHVSQ
FSKERIENIRDHVKVGDSLDVEYLGKDDQGRIKLSRKNLV
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaaatatttaattatgaagtgaagttaaccgaagatagtgagcctataatt
tttgaaacaggatggaaagcaaaacaagctaatggtagtatatggattaaacagggtggc
tcagttgtattggtaacagctgttgcttcaaaagaagcatccgaaaaccttgactttttc
ccactaaccgtaaactacatagagaagttttatgctgttgggaaaatccctggtggattt
ataaaaagagaaggtaagccgagtgataaggaaacactgatatctagattaattgataga
cctataaggccacttttccctgaagggtttagaaatgaaacgcagattattgcaacggtg
gtatcaagcgaccaggttaactctacagatattttagctttaaatgcggcaagtgcagcg
ttgatgatttctgatatcccttttgaagggccaattggtgcagtaagggttggcaaaatt
aatggtgagtatgtaattaatccttctgctgctatttttgatgatttagagatgaatatc
gttgttgctggtacagaagattctatagtaatggttgaagctgggatgaaaaactgcagt
gaagaagatgtagttaatgctcttgaatttggtcatgaggctattaaaaagttagttgaa
gttcaaaaaaggatgagagatgagattggcaaagaaaaatttgagtatatggatttctct
gtttctgaagatgacttaaataagttatacgatgagataggtgataagttaaaagaagct
gttttgatccctggtaagttggaaaaatatgaggcgatagataaggtaaaagaagagtat
tttgagaaactcaaagaagaacttggtgatgagtttgaagagaataaaggttactataat
gaactttatcaagaagtagaaaagaaagtttttagagatataacattgaattctggtaaa
agggtcgatggaaggacttatactgaaataagaccaatagatatcgaagttgatttgctt
ccatgtgcccatggttcagctctttttactagaggcgaaacacaggcattagtaaccgct
actcttgggacaaagtttgatagtcaacttttagatgatttagaaggtgaaacgtataag
agatttatgttgcattataattttccaccattttcagtaggtgagataggttttctaaga
gccccaggtagaagagaaatcggacacggttttttagcagaaagagctcttgcatccatg
ttgccaggtgaagatgaattcccttatacaattcgagtcgtttctgaaatacttgagtct
aatggctcatcttctatggctacggtttgtggtggttctttagcattgatggatgcgggt
gttccaataaaggatgttgtagctggtattgcaatggggcttatttacgaaggtgatgat
aattatgtaatattaagtgatattatggggattgaagatcatttaggtgatatggatttt
aaggtgactggtactgaaactggtataacagctctacaaatggatataaaaataaaaggg
ttaaaaagagagattttagagaaagctcttgctcaggcaaaagaaggtagattatttata
cttcaaaaaatgaaagctgttttagcaaaacctagagaagaagtttcacctaaagctcca
agatttgttaaggttaagataaacccagaaaaagttggtttgttaattggtccagctgga
aaaactattaaatcgataattgataaaactggtgtgaaaatagatattttagaagaaggt
gagcttcatatttttggtaataataaagaagcgatagatagtgccattgagatgattgaa
gctgttactcaagagttgacagttggtaaaatctacaacgcaaaagtcaaaagagttgtt
gattatggtgcttttgtagagctattccctggtgtagaagggcttttgcatgtttctcag
tttagcaaagagagaattgagaatataagggaccatgtaaaagttggtgattctttagat
gtcgaatatcttggtaaagatgatcagggtagaataaaattaagtagaaaaaatttggtg
taa
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