Deferribacter desulfuricans: DEFDS_1778
Help
Entry
DEFDS_1778 CDS
T01188
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DEFDS_1778 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddf03021
]
DEFDS_1778 (rpoC)
03400 DNA repair and recombination proteins [BR:
ddf03400
]
DEFDS_1778 (rpoC)
Enzymes [BR:
ddf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DEFDS_1778 (rpoC)
Transcription machinery [BR:
ddf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DEFDS_1778 (rpoC)
DNA repair and recombination proteins [BR:
ddf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DEFDS_1778 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAI81233
UniProt:
D3P943
LinkDB
All DBs
Position
complement(1789860..1793921)
Genome browser
AA seq
1353 aa
AA seq
DB search
MAVKRVNPYEMEKGPIDFDAIRVRIASPEKIRSWSNGEVTKPETINYRTFKPERDGLFCA
KIFGPVKDWECLCGKYKRMKHRGIVCEKCGVEVIQSKVRRERMGHIELATPVAHIWFFKG
TPSRIGSILDLNIKDLERVLYFESYIVIDPKNTPLKEKELLSEERYRKLVDEYGPNSFVA
KMGAEAIKELLKKVDLDLLIMELKKELQETGSQQKKLKIAKRLRVIEGFRKSGNRPEWMI
LDVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLLELNAPEIIVRNEKRM
LQEAVDALFDNGRRGRVIRGSNKRPLKSLSEVIKGKQGRFRQNLLGKRVDYSGRSVIVAG
PHLKMHQCGLPKIMALELFKPFLYYKLEKEKGYAATIKQAKKMVEEQRQEVWDILEEVIR
EHPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCPAFNADFDGDQMAVHVPLSIEAQ
TEARTLMLSSYNILSPAHGKPLAVPTQDMVLGCYYITRGMKNARGEGKTFSSIDEVVRAY
DNGYLDIHAEIKVRIDGKLYETTTGRVLFYNELPKGLEFDVVNKVLDKKELTKLVDYCYK
KLGNYDTVRFLDTLKDLGFKFATKAGFSICIDDLIIPPERETLIKEAMEKVKEIEEHYRE
GALTAGERYNQIIDVWSNTNDKVTEYLMKTLANQGGDKSAKNKRDKFYNPVYVMAHSGAR
GSKSQISQLAGMRGLMAKPSGEIIETPITASFRDGLTVLQYFISTHGARKGLADTALKTA
NAGYLTRRLVDVSQDVIITDEDCGTIRGIEITALMDGSEVVESLGERIYGRYTLEDIYDP
VTDELLVEANQLITEEVVEKIEKAGIDRVKVRSVLTCEMEFGVCKKCYGLDLATRREVEI
GEAVGIIAAQSIGEPGTQLTMRTFHIGGAASTSAEQSTLNAKFGGKIKFENMRYVKDRNG
FNVVLNRNGILHIIDKDGRSIEKYNIAYGTRLLVNEGDEVKQGTLLAEWDPFAAVIMTEY
QGRVAFGDIIEGETLKEDIDPITGLSQKVVIANTKEKRQPRISIKNSENKTIQRYILPVG
AMIMVEEGEEVFPGDIIAKIPKETQKTKDITVGLPRVAELFEARKPKDPAVIAEIDGVVK
IESGVRGTRKIIIENEETGDKKVYNVSIQRYINVRDGDRVKAGEALVDGLINPHDILAVL
GEEALQKYLVNEIQEVYKKQGVNINDKHIEIIVRQMMRKVIIEDPGDSDYMPNEEVYKHE
FKKVQEELLAQGLRPPQGRPILQGITKAALNTESFISAASFQETTKVLTDAASNGKIDYL
RGLKENVIMGKLIPAGTGVKHLRGKKYKFKKAM
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
gtggctgttaaaagagtaaacccatatgagatggagaaaggcccaatagattttgatgct
atcagagttaggatagcatcaccagaaaaaattagaagttggtctaatggtgaggtaaca
aaacctgaaacaataaattatagaacttttaagcctgaaagagacgggcttttctgtgct
aagatttttggacctgttaaagactgggaatgtttatgtggtaaatacaaaaggatgaag
catagagggattgtttgtgaaaaatgtggtgttgaagttattcagtctaaggtcagaaga
gaaagaatgggtcatattgagcttgctacacctgttgctcatatatggtttttcaaaggg
accccaagtagaataggttctattttagacttgaatataaaagacttggaaagggtattg
tattttgaatcatatattgtaattgacccaaaaaatactccattgaaagagaaagaattg
ctttcagaggaaaggtatagaaagcttgtggatgaatatggacctaattcttttgttgca
aagatgggtgctgaagcgattaaagaattgcttaaaaaggttgaccttgatttactgata
atggagttgaagaaagaactacaggaaacaggaagccaacagaaaaaattaaagatagca
aagagattaagagttattgaaggatttagaaaaagtgggaatagaccagagtggatgata
ttggatgttatacctgttattccacctgaacttaggccacttgttcctcttgatggtgga
agatttgccacaagtgatttaaatgacctttatagaagagttataaatagaaataacaga
ttgaaaaagttgttagagttaaatgctcctgagattattgttagaaatgaaaaaaggatg
ttgcaagaagcagttgatgctctttttgataatggcagaagagggagagtaattagaggg
tctaataagagaccattaaaatcattaagtgaagtgataaaagggaaacagggaagattt
aggcaaaatctgctgggtaaacgtgtagattattcaggtagatctgttattgttgctgga
ccacatttaaaaatgcatcaatgtggtttacccaagattatggcattggagctatttaaa
ccatttctctattacaaactagaaaaagagaaaggctatgctgctacaattaaacaagcg
aaaaagatggttgaagaacaaaggcaggaagtatgggacattttagaagaggtaattaga
gagcatccagttcttttaaaccgtgctcctactcttcataggcttggtattcaggctttt
gagccagtgcttgttgaaggtaaagctattcaattgcatccgcttgtgtgtcctgcattt
aatgcagactttgatggtgaccagatggctgttcacgttcctctatctattgaggctcaa
actgaagcaagaacattgatgttatcatcatataatattttatctcctgctcatggtaag
cctttggcagttcctacacaggatatggttcttggttgttactatattactcgtggtatg
aaaaatgcaaggggagaagggaaaacattttcttcaatagatgaagtggttagagcttat
gataatggatatttagatatccatgctgaaataaaagtgaggattgatggaaagctttat
gaaacaacaacaggtagagttttgttttataatgagttaccaaaaggtttagagtttgat
gtagtaaataaagtgcttgataaaaaagagctaactaaattggttgattactgctataag
aaacttggcaactacgatacagttagatttttagatactcttaaagatctaggttttaaa
tttgctacaaaagcaggattttctatttgtatagatgacctcataatccctccagaaagg
gaaactttaatcaaagaagcgatggaaaaggttaaagagattgaggagcattatagggaa
ggtgctttaacagctggagaaagatataaccagattattgacgtttggtctaataccaac
gataaggtaacagaatatttgatgaaaactcttgcaaatcaaggtggtgataaatcagct
aaaaataaaagggataaattttataatcctgtctatgtgatggcacattctggagcaaga
ggttctaaatcacagattagccagcttgctgggatgagaggtttgatggctaaaccatca
ggtgaaattattgagactccaattactgcaagttttagagatggtttgactgttttacag
tactttatttctactcacggtgcaaggaaaggtcttgccgacacagctttgaaaactgct
aatgccggttatttgacaagaagattagtagatgtttctcaggatgttattattactgat
gaagattgtggaacaattagaggtattgaaatcacagcacttatggatggatctgaagtt
gttgaatcattaggtgaaaggatttatggtagatatacattagaagatatctatgatcct
gttactgatgagcttttagttgaagcaaatcaactgattactgaagaagtggtagagaag
attgaaaaagcaggtatagatagagtaaaagttcgctctgttttaacttgtgaaatggaa
tttggggtatgtaaaaagtgttatggtttagatttagcaactagaagagaagtagaaata
ggggaagctgtgggtattattgctgctcaatcgattggtgagccaggaacacagcttaca
atgagaacattccacattggtggtgctgcatctacatctgcagagcagtctactttaaat
gctaaatttggtggtaagattaagtttgaaaatatgcgatatgtaaaagatagaaacggt
tttaatgtagtattaaatagaaatggtatacttcatataattgacaaagatggcagatca
attgagaaatacaatatcgcttatggtacaagattgttggtaaacgaaggtgatgaggta
aagcagggaacacttttagcagaatgggatccttttgctgcagtcattatgacagaatat
caaggtagggttgcttttggagatattattgaaggtgagactttaaaagaggatattgac
cctattacaggtttatctcaaaaggttgttattgcaaatacaaaagagaaaaggcagcca
aggatttctatcaaaaacagtgagaataaaactattcaaagatatatactgccagttggt
gctatgattatggttgaagagggtgaagaagtattccctggtgatatcattgccaaaata
ccaaaggaaacacagaagacaaaagatattactgtaggtttgcctcgtgttgctgaactt
tttgaagctagaaaaccaaaagatccagcagttattgcagaaatagatggtgtggtaaaa
atagaaagtggtgtaaggggaacaagaaagattatcattgagaacgaagaaacaggagat
aagaaagtctataatgtttctattcagcgttatataaatgttagagatggtgatagagtt
aaagcgggagaagctttagtcgatggattgataaatccacatgacattcttgcagtttta
ggtgaagaggctttacagaaatatttggtaaatgaaattcaagaggtttataaaaagcag
ggtgttaatattaatgataaacatatagaaatcattgttagacagatgatgagaaaggtt
attatcgaagatccaggtgattcagattatatgccaaatgaagaggtttacaaacacgag
ttcaaaaaggttcaagaagagttgcttgctcaaggtttgagaccaccacaaggtagacct
attttgcaaggtataactaaggcagcgctaaatacagaaagctttatctcagcagctagt
ttccaggaaactactaaagtgttaactgacgctgcttcaaatggaaaaatagattactta
agaggcctaaaagaaaacgtaataatgggtaagctaatacctgctggtacaggggtgaaa
catttacgtggtaagaaatataaatttaaaaaagcaatgtaa
DBGET
integrated database retrieval system
