Deferribacter desulfuricans: DEFDS_1798
Help
Entry
DEFDS_1798 CDS
T01188
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEFDS_1798 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddf03019
]
DEFDS_1798 (deaD)
03009 Ribosome biogenesis [BR:
ddf03009
]
DEFDS_1798 (deaD)
Enzymes [BR:
ddf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DEFDS_1798 (deaD)
Messenger RNA biogenesis [BR:
ddf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DEFDS_1798 (deaD)
Ribosome biogenesis [BR:
ddf03009
]
Prokaryotic type
rRNA helicases
DEFDS_1798 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Hera_DD
NAT10_TcmA_helicase
AAA_30
ERCC3_RAD25_C
AAA_22
UvrD-helicase
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAI81253
UniProt:
D3P963
LinkDB
All DBs
Position
complement(1813887..1815464)
Genome browser
AA seq
525 aa
AA seq
DB search
MQSMKEFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSDKDIVAQAQTGTGKTAAF
GIPLIEMIDRKKSGVKCLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSMELQLKR
LKEGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFRYTPENR
RVLLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDKFEALCRIRD
MYPEFYGLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINMLVA
TDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYRNLLYIM
RISNTEIKKEKLPDVEEIIENKKKHIIDDLKAVVENKEHKDYLDFAKELLSVGNPEDIVA
AMLRYRFADDLSSESYSDIEEVTVNRKGKSRLFVAKGRMDGMNETDIKKFIADKCKVDPK
KIKDVRVFEKFSFITVPFEEAEYILSVFKKNKRGRKPLVEMAKAK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtatgaaagaatttgaaaaacttggagtttcaaaaagtattttggaagcttta
aaaaaaaaggggtttgaagaaccaacggatatccagaagttggttatcccaaaaatatta
aatagtgacaaagatattgttgctcaggcacaaacgggtacaggtaaaacagctgcattt
ggtatcccattgattgagatgattgataggaaaaagagtggtgtaaaatgccttatttta
acacctacaagagagcttgctaatcaggtggcagaagagattaactctttaaagggtaga
aggaagcttaagatagttccggtttatggtggtcaatccatggagttgcagttaaaaagg
cttaaagagggtgcagatattgttgtagggacgcctggcaggatattagaccatctaaaa
aggaagagtcttgatatttcaaagatagattttttcatccttgatgaagcagatgagatg
cttaatatggggtttattgatgatataaaaacaatctttagatatacaccagaaaataga
agggttttacttttttctgcaaccatgccaagagagattttaaatcttgctaaaaccttt
atgaaagattacgagttgataaaagttgatgcaaaacagcttaccacttcattgactgag
cagatatattttgaagtaagagaagaggataaatttgaggcactttgtagaatcagagat
atgtatccagaattttacggacttattttttgcaggacgaaggtggatgtggatacggtt
gcaaataagttgattgatagaggatacaacgcagaaggtttacatggtgatttatctcag
tatcagagagaaagaattttacacaagtttaaaacaaagcggattaatatgcttgttgct
acagatgtcgctgcgagaggtatagatattgacaatctaacacatgtgattaactactca
ttgccacaaaatccagaaagctatgttcacaggattggtaggactggtagagcgggtaaa
aaagggatagcaattacctttgtaaccccttcagaatatagaaatcttttgtatattatg
agaatttccaatactgagataaaaaaagagaagctgccagatgttgaagagattatagag
aataaaaagaagcatatcattgatgatttgaaagcagttgttgagaataaagaacataaa
gattatttagattttgcaaaagagttgttatctgttggtaaccctgaagatattgtagct
gcgatgcttagatatcgatttgccgatgatttaagcagtgaatcatatagcgatattgaa
gaagttacagttaatagaaaagggaaatcgagattgtttgttgcaaaaggtagaatggat
ggtatgaacgaaacagatatcaaaaagtttatcgctgataagtgcaaggttgatcctaaa
aagattaaagatgttagagtgtttgaaaaattctcttttattactgtaccttttgaagaa
gcagagtatatattgtcggtgtttaagaaaaataaaagaggtagaaaaccacttgttgag
atggccaaagcaaaatag
DBGET
integrated database retrieval system
