Deferribacter desulfuricans: DEFDS_2002
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Entry
DEFDS_2002 CDS
T01188
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ddf
Deferribacter desulfuricans
Pathway
ddf03030
DNA replication
ddf03430
Mismatch repair
ddf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DEFDS_2002
03430 Mismatch repair
DEFDS_2002
03440 Homologous recombination
DEFDS_2002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddf03032
]
DEFDS_2002
03400 DNA repair and recombination proteins [BR:
ddf03400
]
DEFDS_2002
Enzymes [BR:
ddf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DEFDS_2002
DNA replication proteins [BR:
ddf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DEFDS_2002
DNA repair and recombination proteins [BR:
ddf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DEFDS_2002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAI81453
UniProt:
D3P9R3
LinkDB
All DBs
Position
2027664..2031146
Genome browser
AA seq
1160 aa
AA seq
DB search
MSKDFVHLHLHTQYSLLDGAIHISELMQKLKENGSKAVAITDHGTMYGIVDFYTQALAND
IKPIIGCEVYVAPDSRFNKNYDKKEDKNYHLVLLAQTNTGLKNLQYLVSKAHIEGFYYKP
RIDKELLAKHSKGLIALSACLAGEPARKLLNEGYEAAKKAALEYYEIMGKDNYFLEIQDN
GINEQNLVNKKLIEISKETGIPLVATNDCHFLNREDYYSHQVLMCIQYQQTLNDPNRRDS
HSSELYVKSPKEMWKSFNEVEEALINTVKIAERCNVSMTFGELHLPVYDVPEGYTLKTYL
EHISKEGLHKRLAKVPLELHSKYYERLEYELKIIHEKGYDGYYLIVWDFINYARKNKIPV
GPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDFCMNRREEVIDYV
RNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPEKPGLTLKKALEMD
SELKPNIESIEKGKELLDHALKLEGLLRNAGMHAAGVVIADKPLVEYVPLCKGQNDEVVT
QFEKDTLEKVGLVKFDFLGLKNLTVIDYASKLIRETKDSDFDISSIPLDDKKTFELLSSG
ETTGVFQLESSGMKNLLKKLKPTTFEDIIALVALYRPGPIGSGMLDDFVKRKHGLQEVTY
PLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKKPEEMAKHREIFL
YGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVSYQTAYLKAHYPV
EYMAALLSNELEKGDKVVGFIDECKKMGIKVLKPDINESFRDFIITGDSIRFGLGAIKNV
GFGAIDEIIKERKTNGKYKSIYDLCKRVDLRTVNRKVLESLIKAGALDSFGKNRRQHLQV
LDDAIESGQKEQQLKNEGIITIEDILKENGIDEIEEEHYPDVEEMPENELLKFEKEVLGF
YLTNHPLVNYSNILDIFTKRSSDIETTDENNLIMVGGIVKGVKNYITKTNERMAFVTLED
LEGTMDVVVFPKLYKENVRHLVEDAIIIVKGVVNFKDDTYSIVAEEIFGIEEAFEELING
VKLKITSTGFNKKLCQELKNVILKEKGEKKLFFEVSVPKKGVVTLEASEDFKISPTLAFF
KQIDGILGENRYEVIVENGQ
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagattttgtccatttacacctccacacacaatattcattgttagatggagca
atccatatttcagaacttatgcaaaaattgaaagaaaacggtagtaaagccgtagccatc
accgatcatggaacaatgtatgggatagtggatttctatactcaggcattagcaaatgat
ataaaaccgataataggatgtgaggtctatgtagccccggattcaagatttaataaaaac
tatgataaaaaagaggataaaaattatcacttagtcctattagctcagactaatacagga
ttgaaaaatcttcaatatttagtttcaaaagcccatattgaagggttttattataaacca
cgaattgataaagagcttcttgcaaaacattcaaaagggttaattgccctatccgcttgc
ttagctggtgagcctgcaagaaagctattaaacgaagggtatgaagcagcaaaaaaagcg
gctcttgagtactatgaaattatggggaaagataactattttttagaaatccaagacaat
ggaattaatgaacaaaatttagttaataaaaaattaatagagatatccaaagagacagga
ataccacttgtagcaaccaacgattgccactttttaaacagagaagattattattctcat
caagttttaatgtgtattcaatatcagcaaactttaaatgacccaaatagaagagattct
cactcatcagaactttatgtaaaatcacccaaagaaatgtggaaatcctttaatgaagtt
gaagaagctttaataaacactgttaaaattgccgaaagatgtaatgtctcaatgacattt
ggtgaattacatcttcctgtatatgatgttccggaaggatacactttaaaaacctattta
gaacatatctcaaaagaagggcttcataaaagacttgcaaaagtgccattagaattacac
tcaaaatattacgaaagattagaatacgaacttaaaataatacacgaaaaagggtatgac
ggttattatctaatagtttgggactttataaattatgcaagaaaaaataaaataccagtt
ggccctggtagaggctctggtgctggttctcttgtagcctatgccgtagggattacagat
attgatcctataaaatataaactactttttgaaagatttttaaacccagaacgtaaaagc
atgcccgactttgatatcgacttctgtatgaatagaagggaagaagtaattgattatgtg
agaaataaatatgggcatgatagagtagctcaaatcatcacttttggtaaattgcttgca
agaggtgttataagggatgttggaagagtattggaaatcccattaaaaactgtggacaaa
atagccaaaatgatccctgaaaagccaggcctcactttgaaaaaagcgctggaaatggat
tcagaattaaaaccaaatatagaaagtatagaaaaggggaaagagcttttagatcatgca
ctaaaattagaaggattactaagaaacgcagggatgcacgcagcaggtgtggtaattgct
gataaaccactggtagaatatgtacctctttgtaaggggcaaaatgatgaagtagtaact
caatttgaaaaggatacacttgaaaaagttgggctagttaaatttgactttttaggatta
aaaaacctcacagtaatagattatgcatctaaactgataagagaaacaaaagattcagat
tttgacatatcctcaatcccattagatgacaaaaaaacctttgaacttttatcaagtgga
gaaacaacaggtgtattccagcttgaaagtagcgggatgaaaaaccttctcaaaaaatta
aaaccaacaacctttgaagatataatagccttagtggccctttatagacctggccctatt
ggtagtgggatgcttgatgactttgtaaaaagaaaacatggtcttcaagaggttacttac
ccattacctgagttagaggagatattaaaagagacttacggtattattgtttatcaagaa
caggtaatgcagattgcccaaattgttgctggatactcacttggaagtgcggatttactt
agaagagcaatgggtaagaaaaaaccagaagagatggcaaaacatagagagatattcctt
tatggtgatgaaaaattagggatagaaggcgctgtaaaaagaggttttgatgaaaaaata
gcttcagagattttcgatttaatggcaaaatttgcagaatacggatttaacaaaagtcac
tctgcagcttatgcaatggtgagttatcagactgcatatcttaaagctcattaccctgtt
gaatatatggcagcacttttatcaaatgaacttgaaaaaggggataaagtagttggtttt
attgatgaatgtaaaaaaatggggataaaggttttaaaacctgatataaacgaatcattt
agagattttatcataactggtgattctatcagatttggattaggcgctataaaaaatgta
ggttttggagcaatagatgaaatcataaaagagagaaaaacaaatggtaaatacaagagt
atttatgacctctgtaaacgtgtagacctcagaacagtcaacagaaaagtacttgaatct
ctcatcaaggccggagcacttgattctttcggcaaaaacagaagacagcatcttcaggta
ctcgatgatgccattgaaagcggacaaaaagagcagcaactaaaaaatgaaggtatcatt
accatagaagatattttaaaagagaatgggatagatgagattgaagaggaacattatcca
gatgttgaagaaatgccagaaaacgagctattaaagtttgaaaaagaggttttaggattt
tatctcacaaatcaccctttagtaaattattcaaatattcttgatatttttactaaaaga
tccagcgatatcgagactactgatgagaataatttaataatggtaggaggaattgtaaaa
ggggttaaaaattatatcacaaaaacaaacgaaaggatggcatttgtaactttagaagat
ttagaaggaacaatggatgtggtcgtgttccctaaactttataaagagaatgtaaggcac
ttagttgaagacgctataataattgttaaaggtgttgtcaattttaaagatgacacatat
tctatcgtagcagaagagatttttggtatagaagaagcttttgaagaattaataaacggt
gtaaaactaaaaattacctcaacaggattcaataaaaagctatgtcaagaactaaaaaat
gtaatcctaaaagaaaaaggggagaaaaaacttttctttgaagtcagtgttcctaaaaaa
ggggtggttactcttgaagcttctgaagactttaaaatttcacccacattagcttttttt
aaacagatagatggtatattaggtgaaaatagatatgaggtaatagtagaaaatgggcaa
tag
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integrated database retrieval system
