Deferribacter desulfuricans: DEFDS_P008
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Entry
DEFDS_P008 CDS
T01188
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ddf
Deferribacter desulfuricans
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddf03032
]
DEFDS_P008
03400 DNA repair and recombination proteins [BR:
ddf03400
]
DEFDS_P008
Enzymes [BR:
ddf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DEFDS_P008
DNA replication proteins [BR:
ddf03032
]
Prokaryotic type
DNA Topoisomerases
DEFDS_P008
DNA repair and recombination proteins [BR:
ddf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DEFDS_P008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
DUF6429
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAI81636
UniProt:
D3PEJ4
LinkDB
All DBs
Position
pDF308:4862..6979
Genome browser
AA seq
705 aa
AA seq
DB search
MSYYLVIIESPNKKQAVTKYLKKSFPDKNFIVESTIGHFRDLPKKELGVDLKTFIPKYEL
DKSKKPIINKIIEKAKSATEIYIATDPDREGEAIGWHIDTVLKQNKIDSSKIYRIRYNEI
TPKALSDAIKNKTSLDLNLIKAQETRRILDRLVGWYLSALLMQEFGKDLGLNLSAGRVQT
PAVYLVYERDKKIENFKPEPYFKTTLNLIKDNIEFKATKKYKINDFDTPEKDYQKYNKLK
KIKVIDVKKKNKKEPAPLPYITRTVLSDITKNYKINSKVAMNILQKLFEKGLITYHRTDS
ARVSDDGIKLAKSICNKLNITHLFQGNPGKKGDQDGHECIRPTKILLPNDLEKNSDLTDL
DKKVYKLIFNRFIESQLIPAEVFVTTIVFEDDFKTSGKVIIKEGYLEFRKRFAAANTSNN
VNKSNNKDENKDDTEQENLPDIKKGDIIDITKINKEKLMTKPPAHYTQPTLLKKLEQEKI
GRPSTYASILNKIIDIRKYIIEKKEKNSDYLFITDKGIKMVEFFMTKKDYNWIINVNFTK
EMEGFLDKIAKGNVNESERKNYLRKFLDILKNINLNFREDVESTNKMLNLAKDISQTLNI
NLPDNINKFNVCNNFIKKHYDEYIKAKKPTTKMIEVAQKFFEKDTEISEEEKEKILNSYV
LCSKYIDNKIKAINSKNKSKNKYNKKSKKNMAHLSKKQSKKYNYK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcatattatttggtaattatagagtcacctaataaaaaacaagctgtaacaaaatat
ttaaaaaaaagttttcctgataagaattttatagttgaatctactataggacattttcga
gatttaccaaagaaagagttaggtgttgatttaaaaacatttattcctaaatatgaactg
gataagtcaaaaaaaccaataataaataaaataatagaaaaagctaaatcagctactgaa
atatatatagcaactgacccggatagagaaggggaagcaataggatggcatattgatact
gtattaaagcagaataaaattgattcatctaaaatttatcgtattagatataatgaaatt
acaccaaaagctttaagtgatgctattaaaaacaaaacttctttagatttaaatcttatc
aaagctcaagaaacaagacgtattcttgatcggcttgttggatggtatctatctgcacta
ttaatgcaagaatttggtaaagatttaggtttaaatttatcagctggaagggtacaaaca
ccagctgtttatttggtatatgagcgtgataaaaagatagaaaactttaaacctgaacct
tattttaagactacattaaatttaataaaagataatatagaatttaaagctacaaaaaaa
tacaaaataaatgattttgatacgcctgaaaaagactaccaaaaatataataaattaaaa
aagataaaggttatagatgtaaaaaagaaaaataaaaaagaaccagcacctttgccttat
attacaagaactgtgctatcagatataacgaaaaattataaaattaacagtaaagttgct
atgaatatccttcaaaaactctttgaaaaaggtttaattacataccataggacagactct
gcacgtgttagtgacgatggtattaaattagcaaaatctatttgtaataaactaaatatc
acacatctatttcaaggaaatcctgggaaaaaaggggaccaagatgggcatgaatgtatt
aggccaacaaagattttgttacctaatgatttagaaaaaaattcagatttaacagattta
gataaaaaagtttataaattaatttttaatcgctttattgaaagtcaattgataccagct
gaagtttttgtaactactattgtatttgaagatgattttaaaacttctggaaaagttata
attaaagagggttatttagaatttagaaagagatttgcagcagcaaacacaagtaataat
gttaataaaagtaataataaagatgaaaataaagatgatacagaacaagaaaatttacct
gatataaaaaaaggagatattattgatataacaaaaatcaacaaagaaaaattaatgact
aaacctcctgctcattatacacaaccaactttattaaaaaagttagaacaagagaaaata
ggacgtccatctacttatgcttctattttaaataaaattatagatattagaaaatatatt
atagaaaaaaaggaaaagaattcagattatctgtttattacagacaaagggattaaaatg
gtagaattttttatgactaaaaaagactataattggattataaatgttaactttactaaa
gaaatggaaggttttttagataagatagctaaaggaaatgttaacgaatcagaaagaaaa
aactatttaagaaaatttttggatattctaaaaaatattaatttaaattttcgagaagat
gtagaatcaacaaataaaatgttgaatcttgcaaaagatataagtcaaacattaaatata
aacttacctgataatattaataaatttaatgtttgtaataactttataaagaaacattat
gatgaatatatcaaagcaaaaaaaccaacaactaaaatgatagaagttgctcaaaaattt
tttgaaaaagatacagaaatcagtgaagaagagaaagaaaaaatattaaatagttatgtt
ttatgttctaaatatattgataataaaataaaagctattaattctaaaaacaaatctaaa
aataaatataataaaaaatctaagaagaatatggcacatctatctaaaaaacaatctaaa
aaatataactataaataa
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