Deferribacter desulfuricans: DEFDS_P129
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Entry
DEFDS_P129 CDS
T01188
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ddf
Deferribacter desulfuricans
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ddf03016
]
DEFDS_P129
Enzymes [BR:
ddf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DEFDS_P129
Transfer RNA biogenesis [BR:
ddf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DEFDS_P129
Prokaryotic type
tRNA splicing ligases
DEFDS_P129
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DASH_Dad1
Motif
Other DBs
NCBI-ProteinID:
BAI81751
UniProt:
D3PEV9
LinkDB
All DBs
Position
pDF308:147607..149055
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AA seq
482 aa
AA seq
DB search
MIKGKYTDAIIFTNEIENEALSQIYSIVNHPVFTGPVRIMPDVHAGAGCVIGFTAPLTNK
IIPSIIGYDIGCGVSTCILGKIKKEEFLDNWVIIDKKLREIIPLGQNTHEKSSIIKENKK
FFEDIFKSQKQYYLNKISNVFNKIFKNEKLNIKLEKYFSLDYIFKELPAKIGLPGGYIFS
ALGTLGGGNHFIEVEVNESDDLFVTIHTGSRNLGKKIAEYWQKKAIASCRTGNKDRFKKE
IELLKMKYKGKDLENAINDLKVKYKNNNFSQELSYLSSPSDVAGYLIDMFIAQIFATYNR
YCIYNFVEQIISYILKKDNNLLLDDLVLNSFESVHNYVDFDDLIIRKGAIKTPIGKEIII
PLNMKDGVIIAKVKNEPIKLIERNFSAPHGAGRKMSRSKAKQSINLNDFRKSMVGIASSS
VNETTLDESPMAYKDKDNIITYLNNIADIVYILKPIYVLKDSIPTYICNNEIETKNIMDN
IM
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaggaaaatatactgatgctattatttttactaatgaaatagaaaatgaagca
ttatctcaaatatatagtattgtaaatcatccagtatttactggaccagtaagaataatg
cctgatgttcatgcaggtgctgggtgtgtgataggttttactgcacctttaactaataaa
attataccatctattataggatatgatattggatgtggtgttagtacatgtatattaggt
aaaattaaaaaggaagaatttttggataactgggtaattattgataagaaattaagggaa
attatacctcttggacaaaatacacatgaaaagtcttctataataaaagaaaataaaaaa
ttttttgaagatatttttaaatcgcagaagcaatattatttaaataaaataagtaatgta
tttaataaaatatttaaaaatgaaaaattaaatataaaattagaaaaatatttttcattg
gactatatatttaaagaattacctgctaaaataggattacctggtggttatattttttca
gcattaggaactcttggtggaggtaatcattttatagaagtagaagttaatgaaagtgat
gatttatttgttacaatacatacaggatcaagaaatttaggcaagaaaatagcagaatat
tggcaaaaaaaagctattgcatcttgtagaactggtaataaagataggtttaaaaaagaa
atagaattattaaaaatgaaatataaaggaaaagatctggaaaatgcaattaatgatttg
aaggttaaatataaaaataacaatttttctcaagagttatcttatttaagtagtccttct
gatgtggcaggctatttaatagatatgtttatcgcacagatatttgctacatataatagg
tattgtatctataattttgtagagcaaattatttcatatattttaaagaaggataataat
cttttacttgatgatttagttttaaatagttttgaaagtgtacataattatgttgatttt
gatgatctaattattcgtaaaggtgcaataaaaacacctataggaaaggaaattataata
cctttaaatatgaaagatggagtaataattgcaaaagtaaaaaatgaacctataaaatta
atagagcgtaatttttcagctcctcatggtgctggtagaaaaatgtcacgttcaaaagca
aaacaatctataaatcttaatgattttagaaagtctatggtaggtatagcatcatcaagt
gtgaatgaaacaacattagatgaatcacctatggcttataaagataaagataacattata
acttatctaaataacatagcagatattgtttatattttaaaaccaatatatgttttaaaa
gacagtattcctacatatatatgtaataatgaaattgaaactaaaaatataatggataat
attatgtaa
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