Desulfitobacterium dehalogenans: Desde_0417
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Entry
Desde_0417 CDS
T02146
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desde_0417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddh03021
]
Desde_0417
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_0417
Enzymes [BR:
ddh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desde_0417
Transcription machinery [BR:
ddh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desde_0417
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desde_0417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFL98882
UniProt:
I4A4J8
LinkDB
All DBs
Position
428885..432352
Genome browser
AA seq
1155 aa
AA seq
DB search
MLDVNNFDRMRIGLASPTMIREWSHGEVRKPETINYRTLKPEREGLFCEKIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFVSYIVTDAGDTSLMKKQLLTETEYREYRDKYGNRFKASMGAEAIKILLE
EMDLDKLNDELRVELKEVSGQRKIRAIRRLEVVEAFKESGNRPDWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLRLHQCGLPKE
MALELFKPFVMKKLVKEGHAHNIKSAKRMVERVRSEVWDVLEEVITEHPVLLNRAPTLHR
LGIQAFEPILVEGRALQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSAHNIL
NPKDGRPVASPTQDMVLGSYYLTMERPGALGEGKIFKNRDEAVLAYETKQANLQAMIKVR
QPSGELLETTIGRLIFNSVIPPEVGYINEVAGKKVLNNVVAKCYRLGGYKATAQLLDGIK
SLGFKYSTRAGMTVGLADITVPEEKKKILADADGMVNKTEQQFRRGLITDEERYEKVIDI
WTKATDTVTKALMYSLDKFNPVYMMATSGARGNIQQLRQLAGMRGLMADPSGRTIELPIK
ANFREGLTVLEYFISSHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRDEDCGTTQGI
TVDDVKDGPEVIEKLEERLVGRFLLEDLKHPETGEILATADNEITEEQAQEIAAVYDKVT
IRSVLTCKTRYGVCRKCYGRNLATGHHVEMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVEELFEARKPKGQAIISENDGIVAIREVKGRREVDVTGDNEERMTYTIPY
GSRLKVREGDRIEAGDELTEGSINPHDMLKVKGIRGVQVYLLGEVQRVYRLQGVDINDKH
IEVMVRQMLRKVKVEEAGDTSLLPGGLIDVFDFEEENTKVIAAGGEPAVARPVLLGITKA
SLATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMSRYRNVKVI
NLDEEQVENLDTVNS
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacaactttgaccggatgcgtattggtttggcttctccgacgatgatc
cgtgagtggtctcatggagaagttaggaagcctgaaactatcaactatagaaccctaaag
cctgagcgggaaggactcttttgtgaaaaaatctttggaccaacccgtgattgggagtgt
cattgcggcaaatacaagcgggttcgctataaggggattgtctgcgaccgctgcggtgta
gaagtcacccgttccaaggtgcgtagagagcgcatgggccatattgagctggccgctcct
gtctcccacatctggtacttcaagggtattcccagccggatgggacttcttttagatatg
tctccccgctccttggaaaaggtcctctatttcgtatcctacattgttaccgatgctggg
gatacctctttaatgaaaaaacaacttctcacggaaaccgaataccgtgaataccgtgat
aaatacggaaaccgcttcaaagccagcatgggtgccgaagccattaagattcttcttgag
gaaatggacctggataagcttaatgacgaactccgggttgagctgaaggaggtctccggc
caaaggaaaatccgggccatccgccgcctggaagtagtggaagccttcaaagaatcagga
aaccgtcccgattggatgattatggacgtcgttcccgtcattccaccggagctccgcccc
atggtacagctggatggaggacggtttgccacctccgacctcaacgacctttaccgccgg
gtaatcaacagaaacaaccgtctcaagcgtcttttggatctgggggcgccggatatcatt
gttcgcaatgaaaaacggatgctgcaagaagctgtggatgcgctgatcgataatggccgt
cggggacgtcccgttaccggccccggcaatcgtcccttgaaatccctaagcgatatgctc
aaaggaaagcaaggacgcttccgccaaaaccttctgggaaaacgggttgactactccggc
cgttccgttatcgtggtgggaccgaatctaaggcttcatcaatgtggactgcctaaggaa
atggctttggagctctttaaacctttcgtcatgaaaaagctggttaaagaaggccacgcc
cataatatcaagagcgctaagcggatggtggaacgggttcgttccgaggtctgggacgtt
cttgaagaagtgatcaccgagcatcccgtgcttctgaaccgtgctccaacccttcaccgc
ttaggaattcaagcctttgaacccatcttggttgaaggacgtgccctgcagattcatccg
ctggtctgtactgcttacaatgcagacttcgacggagaccaaatggctgttcacgtccca
ctttccgcagaagctcaggcagaagcaagacttttgatgctctccgctcataatattctg
aacccaaaagacggtcgtcccgtcgcttcacccactcaggacatggttttaggttcttac
tacctgaccatggaacgtccgggagcacttggggaaggtaagatctttaagaatcgagat
gaagcggttctagcctatgagaccaagcaggcaaacctccaagcgatgattaaagttcgc
cagcccagcggagaacttttggaaaccacgattggccgtctcatctttaactcagttatc
ccgccggaggtagggtatatcaacgaagtggctgggaagaaggttcttaataatgtggtg
gccaaatgctatcgcctcggcggctataaagcaacggcccagcttttggatggaatcaag
agtttaggttttaaatactccacccgcgccgggatgaccgttggacttgctgatattaca
gtacctgaagaaaagaaaaagattcttgctgacgccgatggtatggtcaacaaaaccgag
cagcaattccgtcgtggtttgattaccgatgaggaacggtatgagaaggtaatcgatatc
tggacgaaagctacggacaccgtgaccaaagccctgatgtattccttggataaattcaat
ccggtatacatgatggccacctccggtgctcggggtaatattcaacagctccgtcagctg
gctggtatgcggggacttatggcggatccttcgggacgaaccattgagttacccattaaa
gccaatttccgtgagggactcactgttttggaatacttcatctcctcccatggagcacgg
aaagggttggccgatacggctctacggaccgctgactccggttacctcacccgtcgtctt
gtagacgtatctcaagatgtcatcgtccgggacgaagactgcggcaccacccaaggaatt
accgtggatgatgtcaaggatggcccggaggtcatcgagaagctggaagaacgcctcgtg
ggccgcttcctcttggaagacctaaagcatcctgagacaggagaaatcctggctaccgcc
gataacgagattacggaggaacaagctcaggagatcgccgctgtttatgataaagtcacc
attcgttccgtactcacctgtaaaacccgctatggggtatgccgtaagtgctacggacgc
aacctggcgacaggtcatcatgtggagatgggagaagccgtcggaatcatcgctgcccaa
tccatcggtgagccgggaactcagttgactatgcgtaccttccataccggcggtgtagcc
ggggacgatatcacccaaggtttgccccgtgttgaagagctttttgaagcccgtaaaccc
aaaggtcaagccatcatctcggaaaacgacggtatcgtcgcaattcgcgaagtcaaaggc
cgtcgtgaagtggatgtcaccggtgacaatgaagagcgtatgacatacactatcccatat
ggctcccgtttgaaggttcgggaaggtgaccggattgaagccggagatgaacttaccgaa
gggagcatcaatcctcatgatatgctcaaggttaagggaatccgcggcgtccaggtttat
cttttgggcgaagttcaacgggtttaccgtctgcagggtgtggatattaacgataaacac
atcgaagttatggttcgtcagatgcttcgtaaagttaaagtggaagaagccggagatacc
agcctcttgcccggcggtttgattgatgtctttgatttcgaagaagagaataccaaagtc
attgctgcgggtggagaacctgcggtagcacgcccggtacttctgggaatcaccaaagcc
tccttggcaacggattccttcctttctgcggcatccttccaggaaactacccgtgttctt
acggaagcagccattaaaggaaaagtggatcctctcttggggctcaaggaaaacgtcatc
atcgggaaacttataccggcgggtacgggaatgtcccgttatcggaatgtaaaagttatt
aatcttgatgaagaacaagttgaaaatcttgacactgtaaattcgtaa
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