Desulfitobacterium dehalogenans: Desde_0543
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Entry
Desde_0543 CDS
T02146
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03420
Nucleotide excision repair
ddh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desde_0543
03430 Mismatch repair
Desde_0543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_0543
Enzymes [BR:
ddh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desde_0543
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desde_0543
MMR (mismatch excision repair)
Other MMR factors
Desde_0543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_22
AAA_25
SpoU_sub_bind
DEAD
Motif
Other DBs
NCBI-ProteinID:
AFL99001
UniProt:
I4A4W7
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All DBs
Position
567069..568883
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AA seq
604 aa
AA seq
DB search
MNEYFKIKLSQISDDEKQIEAYNSTGNTVVIAGPGSGKTTVLTLKVMRLLSEVITPPRGL
ACLTFSREASREFQERLKLLGLQRRGNVFLGTVHSFCLSEVLMPFAKLYPNYGIPYPIKI
ISDSKRKRLFQRIKKQIPDELTIEEMDKERTRDISGFSKVSIPSYDVALRVAVAFERELF
SRGYIDYISMVKIATMLIQNEAYVQQALEAKFPWLVIDEYQDLGKPLHEMVLSLLQSTNI
KIFAVGDADQSIYDFQGASPEYLVELSEWKSINQCIRLMNNYRSAKGIIEASETVLNIKR
NYKARGALKDYPANIEFFVCEEGMDEQYQVATSIIEDCIAEGIPFHEIAILAGYNNQLKD
LGKLCQSKGIPYYLAKQDFIRSDFIKWMENCAAWVSSSRKVLFDDIFEYWDFLLMQHRQS
IDYDNGILAKRNLYTILDKSRHYANTLVQWFDFVLDSLQIETLLHDSEIYPDEIENLKKL
NELLSDELYTDFSLGQFTNLGLPENQVVLSTRHGAKGLEFDIVIMLGMEEGSFPYYKNTS
QREIDEAHRLCFVSVSRARKKCILVRSKTLIIPKKDGTWWNKPCEPSRFWNMLYSRHSQI
NGYS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtactttaaaatcaaactttctcaaattagcgatgatgaaaaacaaattgaa
gcgtataattccacaggtaacaccgttgttattgctggtccaggcagtggaaaaaccacg
gtcttgacgctgaaagttatgcgtctgttaagcgaagtcattacccctccaagaggatta
gcctgtcttacctttagccgtgaagcctcccgtgaattccaggaacgtttgaaattactg
ggactccaaagacgtggtaatgtatttttgggaaccgttcatagcttttgtttatcggaa
gtattgatgccttttgcaaaactatatcctaattatggaataccttatccgattaaaatt
atttccgattcgaaaagaaaacggctgtttcagcgtataaaaaaacaaatacctgatgag
ttaactattgaagagatggataaagagcgaactcgtgacattagtgggttcagtaaggtg
tctatacctagttatgacgttgctttgcgggttgccgtagcatttgagagagaactgttc
agccgtggttatattgattatattagtatggtaaaaatcgcgaccatgcttatccaaaat
gaagcttatgtgcaacaagcgctagaagcaaaatttccatggcttgttattgacgaatat
caggatttgggaaagccattgcatgaaatggttttatcacttttgcaaagtacaaatatc
aagatttttgctgttggcgatgcagatcaatcaatatatgattttcaaggggcttcgcca
gaatatctcgttgaattatccgaatggaaatctattaatcaatgtattcggttaatgaac
aattaccgcagtgccaaaggtattatcgaagcatcggagactgttttgaatattaaacgc
aattacaaagcacgcggtgcacttaaagattacccggcgaacattgaattttttgtatgc
gaagaagggatggacgaacaatatcaggttgcaactagtattattgaagactgtattgca
gaaggtataccgtttcatgagattgctattctagccggctacaataatcaattaaaagat
ttaggaaagctctgtcagagtaagggaattccttattacttagccaagcaagatttcatc
agaagcgattttataaaatggatggaaaactgcgctgcatgggtgtcatcttctcgtaaa
gtcttatttgatgatatctttgaatattgggacttcttgttaatgcagcacaggcaatca
attgattatgataacgggattctagccaagcggaacctctataccattctggataaaagc
cgccactatgcgaatacgcttgtacagtggtttgattttgttcttgattcgctgcaaata
gagactttattgcacgattcggaaatatatccggatgaaatcgaaaatctaaagaaactt
aatgagctgctaagcgatgaactttatacggatttttcgttaggccagttcactaatctt
gggcttccagagaaccaagttgttttatctacaagacatggagctaaaggtttggaattt
gatattgttattatgctcggcatggaagaagggagctttccatattacaaaaacacctct
cagcgagaaattgatgaagctcatagactttgctttgtttctgtgagtcgagcaagaaaa
aagtgtatactagtacgttcaaagactttaattataccgaaaaaggatggcacttggtgg
aataaaccatgtgaaccatctaggttctggaatatgttatacagccgccattcccaaata
aatggctactcataa
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