Desulfitobacterium dehalogenans: Desde_1952
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Entry
Desde_1952 CDS
T02146
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desde_1952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_1952
Enzymes [BR:
ddh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Desde_1952
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Desde_1952
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Desde_1952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AFM00340
UniProt:
I4A8Q5
LinkDB
All DBs
Position
1980065..1980886
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AA seq
273 aa
AA seq
DB search
MPELPEVETIRRSLCQRILNLRIEDILIRWPGAVEGYEGKTFADTVKGLRIQSIERRGKY
LLFTLEEGWSFIAHMRMTGRLVYHAQGQEPEKHTHVVLKLSSGEVHFTDTRKFGRLQLVR
TEERLKQPSLARLGPEPLEGGFSAEELARRLAPRKLAIKAALLDQNLLAGVGNIYADEAL
FRAGIAPERCANSLTKEETEKLYTAICQVLEEGIAANGTSFRDYQDANGEKGDFQKELNV
YGRGGEACKCCGHTLERIRLAGRSTVFCPRCQR
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactaccagaagtagaaaccattcgcagaagcctgtgccagcgcattcttaat
ctaaggattgaggatatcctgattcgttggccaggtgctgtagagggatatgaagggaaa
acctttgcagatactgtcaagggattgaggattcaaagtatcgaaagacgtgggaaatac
cttttgtttaccttagaagagggctggtccttcatcgctcatatgcgcatgacaggacgc
ttggtttaccacgcccaaggacaagaaccggaaaagcatacccatgtggttcttaagcta
tcttcaggtgaggttcattttaccgatacgcgcaaattcggccggctgcagttagtgaga
actgaggaacgcctcaaacaaccctctttagcccggttgggtccggagcctttagaaggc
ggctttagcgcggaagaattggcacggcgcctggctccccgcaagctggctattaaggca
gccctcttggatcagaaccttctggcgggagtcggcaatatctatgccgatgaggcctta
tttcgggcggggattgccccggagcggtgtgccaattctttgacgaaagaggagacagag
aagctttatactgccatttgtcaagttcttgaggagggtatcgccgccaatggcacctct
ttccgggattatcaggatgctaatggagaaaaaggcgactttcaaaaggaattgaatgtc
tatggtcgtgggggagaagcgtgtaaatgttgcggccatactctggaaagaattcgtctg
gccggcaggtcaactgtgttttgcccccgctgtcagaggtaa
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