Desulfitobacterium dehalogenans: Desde_3116
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Entry
Desde_3116 CDS
T02146
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ddh
Desulfitobacterium dehalogenans
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddh03032
]
Desde_3116
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_3116
Enzymes [BR:
ddh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Desde_3116
DNA replication proteins [BR:
ddh03032
]
Prokaryotic type
DNA Topoisomerases
Desde_3116
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Desde_3116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_ribbon_RPB9
Zn_ribbon_GRF
HVO_2753_ZBP
Ogr_Delta
Auto_anti-p27
Zn_ribbon_PADR1
RraB
Toprim_4
Zn_ribbon_IFT122
Motif
Other DBs
NCBI-ProteinID:
AFM01408
UniProt:
I4ABS3
LinkDB
All DBs
Position
complement(3115841..3117931)
Genome browser
AA seq
696 aa
AA seq
DB search
MAKTLVIVESPAKAKSISKFLSNNYTVKASMGHLRDLPKSQMGVDVDKDFEPKYIAIRGR
GDLIKELRAAAKSANKVLLASDPDREGEAIAWHLGHLLGLDLSEKCRIEFHEITKPAITA
AIKHPRQIDSSKVDAQQARRVLDRLVGYQLSPFLWRKVKKGLSAGRVQSVAVRLICDREE
EIREFIPEEYWTLTASLKSEGGVFSAKLARKGDHKITIASEEEMKKVLQELADQSYRVKD
VRTREKKKQPSPPFTTSSLQQEAHRKLNMSPKRTMMLAQQLYEGIELGKAGGIGLITYMR
TDSVRISEIAQEEAKDFIVDHYGEDYYPPEPRQFKSKGRAQEAHEAVRPTSILRTPDSMK
EFLSRDQLRLYRLIWDRFLASQMSAAILDTLTVEVEAGEYLFRANASTVRFPGYLAVYED
GQDENEDQQEGTLAANIQPHESLSAVHLQEKQHFTEPPPKYTEASLVRKMEEEGIGRPST
YAPTIETIQSRGYVAKEGKQLSPTELGEIVISILTEYFPEIVDLEFTANMEKRLDDIEEG
ALPWKAVIREFYGPFAESLEEADQLMGKVQIEDKVSEEICENCGRNMVIKMGRYGKFLAC
PGFPECRNTKPLLEEVGRSCPDCGNPLVIRRSKKGRKFYGCSTYPECEFVSWELPAPEPC
PKCGGLMVVKTSKQGKKYVCTNSECRFDKQVEEQAE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaacactagtgatcgttgaatctccggctaaggctaaatccataagcaaattt
ttgagcaataattatacagtcaaagcgtccatgggacatttgcgggatttgcctaaaagc
caaatgggagttgacgtagacaaagattttgaacccaaatatatagctatccgtggacga
ggagatttaattaaagagcttcgcgctgccgccaagtctgccaataaagttcttctggcc
tctgaccctgaccgcgaaggggaagctattgcttggcatttaggccacctgcttgggttg
gatctatcagagaagtgccgtattgaattccatgagattacaaaaccagccatcacggca
gcgattaaacatccccgtcagattgattccagcaaagtagatgcccaacaagcccgtcgt
gtcttagatcgtttggtggggtaccagttgagtccgttcctttggagaaaagtgaaaaag
ggcttaagtgccgggcgggttcaatcggttgccgtccgtttaatctgtgatcgggaagaa
gagatacgggagtttattccggaagagtactggacattgaccgcttccttgaaaagtgag
ggaggggtattttctgctaagcttgccaggaaaggggatcacaagatcaccattgcttcg
gaagaagagatgaagaaggttctccaagaactggccgaccagtcataccgggttaaagat
gttcgtaccagggagaaaaagaaacaaccatcccctccctttaccaccagcagcctgcaa
caggaagctcatcgcaagctgaatatgtcacccaaaaggaccatgatgctggcccaacag
ctctacgaagggatagagctgggtaaagcaggaggtataggtttaattacctatatgcgt
accgactccgtgaggatttcggaaattgctcaggaggaagccaaggattttattgtggat
cactatggggaggattattacccgccggaaccacgtcaatttaaaagcaaaggccgggcc
caagaggctcatgaggccgttcgccctacttccatattgagaaccccggactccatgaag
gaattcttgtcccgggatcaacttcgtctttaccgattaatctgggaccgtttcttagca
agccaaatgagcgcggctatccttgatacgttaaccgttgaagtagaagccggtgagtac
ctgtttcgtgctaacgcttccacggtgcgttttcctggatatcttgccgtttacgaagat
ggacaggatgagaatgaggaccaacaagaagggaccctcgcggccaatattcagccccat
gagagtcttagtgccgttcatctccaagagaagcagcattttacagaaccgcctcctaag
tatacggaagcttccttggtgcgaaaaatggaggaggagggaattggccggcccagtacc
tatgcccctactatcgaaacgatccaatcacggggctatgtggctaaagaaggaaaacag
ctttctcctacagaattgggagaaatcgtcatctccattctgacagagtattttccggaa
attgtggatttggaatttaccgcaaatatggagaaaaggctggatgatattgaagaaggg
gctttaccctggaaagccgtcattcgggaattctatggcccctttgcggaatccttagag
gaagccgatcagcttatgggtaaagtacaaatcgaagataaggtatcggaggaaatctgt
gaaaactgcggacgtaacatggtgatcaaaatgggacgttatggcaaatttctggcttgc
ccaggcttccccgaatgccgcaatacaaagcctttgttggaagaggtcggaaggtcatgc
cccgattgcgggaacccgcttgttatccggcgcagcaaaaagggcagaaaattctatggc
tgcagcacttatccggaatgtgaattcgtatcctgggagttgccggcaccggaaccctgt
ccaaaatgcggaggattaatggtggttaaaacctcgaagcaagggaaaaaatatgtctgt
acgaattccgaatgccgttttgacaagcaagtagaggagcaagcagaataa
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