Desulfitobacterium dehalogenans: Desde_4048
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Entry
Desde_4048 CDS
T02146
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desde_4048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_4048
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desde_4048
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desde_4048
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SWI2_SNF2
DUF87
UB2H
AAA_16
Kinesin
AAA_22
UvrD-helicase
Thg1C
Microtub_bd
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AFM02310
UniProt:
I4AEC5
LinkDB
All DBs
Position
complement(4125801..4127852)
Genome browser
AA seq
683 aa
AA seq
DB search
MEFRLQAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLI
LAHNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKM
RHSATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNEILKKLISIQYD
RNDMAFERGTFRVRGDVVEVHPAGSGEHAIRIEMFGDEIEHIYEINVLTGEILGERRHVS
IFPNSHYVTARDKVLVAAENIEKELEEQLKRFKDENKLLEAQRLEQRTRYDLEMLREMGF
CNGVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLV
DYGFRLPSALDNRPLKFAEYEELVPQRVYISATPGPYELEHCPQIVEQIIRPTGLLDPEI
SVRPTKGQIDDLIGEINQRIERDERVLVTTLTKKMAEDLTDYLKNLNMSVKYLHSDITTL
ERVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA
RNAQGKVIMYADQITRSMRVAIDETNRRRAIQEAYNEKHGIIPQTIRKKIHEAPEATKVA
EKKAAYGSKMPAEELAELLKSLEQEMRLAAKDMDFERAAEIRDAIIELKGEENKYKRPTQ
GRARKRESPAPAGRKSAPRKRSK
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagttccgtttacaagccccctataagccctccggggatcagccccaggcgattgat
gctctggtcgaaagtatacattccggcagacgtcatcaaaccttgctgggggtaacaggt
tcaggaaaaacctttactatggccaacattattgaaaaagttcaacggcctactctgatt
ctcgctcataataagactttagcggctcagctttacactgagttcaaggagttctttccg
gaaaatgctgtggagtattttgtcagttactatgattactatcagccggaagcctatgtc
ccttccagcgatacctatatagaaaaggattcctctatcaatgatgagattgataaaatg
cgccactccgctacggcagctttattcgaacgtcgtgatgtgattgtggtggccagtgta
tcttgtatttatggtttgggttctcccgaggaataccgtgatctgatggtttccttacga
caggggcaggaaattgaccgcaatgaaattttaaaaaaactcatatccattcagtatgat
cgcaatgatatggcttttgaacgaggaaccttccgtgtccgtggagatgtagttgaagtc
catcccgccgggtccggtgaacacgctattcgtatcgaaatgtttggggatgaaatcgaa
catatctacgagatcaatgttctaacaggtgaaatactaggagaacgccgacatgtttcc
attttcccgaactctcactatgtcacggcacgagataaagtattagtagctgccgagaat
attgaaaaagaattagaagagcagctcaaacgatttaaggatgaaaataaacttttggaa
gctcagcgtttagaacaaagaactcgttatgatctggagatgctgagggagatggggttt
tgcaacggtgttgaaaactactcccgccatttaaccttcagagaagcaggagaaaccccc
tatacccttctgcactttttccctgaggattaccttatgatgattgacgaatcccatgtc
actttacctcaagttcgcggtatgtatgaaggggaccgttcccgtaaaaccaccctggta
gactacggattccggcttccctccgctttagataaccgccccttgaaattcgctgagtat
gaagaactggtcccccaacgagtctatatcagcgccactcccggcccctatgagctggaa
cattgtccccagattgtggagcagattattcgacccaccgggcttttggacccggagatt
tctgtccggccgacaaaaggtcagattgatgatcttatcggggaaatcaaccaaaggatt
gaacgggatgaacgtgttctcgtcaccaccctgaccaaaaagatggcagaggatttaacg
gattatctgaaaaacctcaatatgtccgtcaaatacctccactccgatattacgactttg
gagcgggtggagatccttcgggaattgcgtttgggagatatcgatgtcatcgtgggaatc
aacctgctccgggagggcctggatcttccggaagtttccctggttgctattctcgacgcg
gacaaagagggctttctccgcgctgaacgctctctgattcagaccattggccgcgccgct
cggaatgcccaagggaaagtcattatgtatgcggaccaaataacccgctccatgagagtg
gctatcgacgaaaccaatcgccgccgggctattcaggaagcctataatgaaaagcacggg
attatcccccagaccattcgcaaaaaaatccacgaggctccggaagccaccaaggttgca
gaaaagaaagcagcctatggctcgaaaatgcctgctgaagaactggcagaactgcttaag
agcctggaacaagaaatgcgcttagctgccaaagatatggacttcgaacgagcggccgag
atccgcgatgctattatcgaacttaaaggggaagagaacaaatataaacgccctactcaa
ggccgtgctcgcaaaagggagtcgccggctccggcaggtcgcaagagtgcgcccaggaag
aggagtaagtag
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