Dictyostelium discoideum (cellular slime mold): DDB_G0267414
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Entry
DDB_G0267414 CDS
T00245
Symbol
repD
Name
(RefSeq) transcription factor IIH component
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03022
Basal transcription factors
ddi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DDB_G0267414 (repD)
09124 Replication and repair
03420 Nucleotide excision repair
DDB_G0267414 (repD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddi03021
]
DDB_G0267414 (repD)
03036 Chromosome and associated proteins [BR:
ddi03036
]
DDB_G0267414 (repD)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0267414 (repD)
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
DDB_G0267414 (repD)
Transcription machinery [BR:
ddi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DDB_G0267414 (repD)
Chromosome and associated proteins [BR:
ddi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
DDB_G0267414 (repD)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DDB_G0267414 (repD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
8616111
NCBI-ProteinID:
XP_647302
dictyBase:
DDB_G0267414
UniProt:
Q55G81
LinkDB
All DBs
Position
1:complement(833130..835460)
Genome browser
AA seq
776 aa
AA seq
DB search
MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ
VKNPSIKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQPRV
SEERDGKVVDALCRELTSSWNRESPTSEKCKFFENFESNGKEILLEGVYSLEDLKEYGLK
HQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNIDNVCINA
LSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTRADETTSD
PVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAFLQGLYHATQI
SSRTLRFCSSRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLIIIEPYYQRQNN
TYDQIFQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVVERLTMSLNR
NCICPCILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICFFTSYSYMEQ
IVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAVLLSVARGKVSEG
IDFDNQYGRCVILYGIPYINTESKVLRARLEFLRDRYQIRENEFLTFDAMRTASQCVGRV
IRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAISLSKTFLREMGQP
FSREEQLGKSLWSLEHVEKQSTSKPPQQQNSAINSTITTSTTTTTTTSTISETHLT
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttatattgaagatcttttagtatattttccatattcatatatttatccagaa
cagtatagttatatggtagcattaaagagatcattagataatggtggaccatgtatatta
gagatgccaagtggtactggtaagacggtatcattgctatcgttaatttcatcatatcaa
gttaaaaatccatcaattaaattaatttattgttcaagaacagtgccagagattgaacaa
gctacagaagaggctagaagggtattacaatataggaattcagaaatgggggaagagtca
cctaaaacgttatgtatgtcaatgtcgtcacgtcgtaacctttgtattcaaccaagggta
tcggaagagagggatggtaaagtggtcgatgccctctgtagagagttgacatcctcatgg
aatagggagtcacccacgagtgaaaaatgtaaatttttcgagaattttgaatctaacgga
aaggaaatcctactagaaggggtgtattcattggaagatctaaaagagtatggattaaaa
catcaaatgtgtccatactttttatcaagacatatgttgaattttgcaaatattgttata
tttagttatcagtatcttttagacccaaagatcgcctcattgatatcatcatcgtttccg
agtaactcgattgtggttttcgatgaagctcataatattgacaatgtttgtatcaatgcc
ctatcaatcaatattgataataaactgttggatacgagttcaaagaatatagcgaaaatt
aataaacaaattgaagatattaaaaaagttgatgaaaagagattaaaagatgaatatcaa
agattagttaatggtttggcaagaagtggttcaacaagagctgatgaaacaacttctgac
ccagttttaccaaacgatgtaattcaagaggctgtgccaggcaatattagaaaagccgag
catttcatatcactattgagaagagttgtagattatttaaaaagtagattaaaatcacaa
atgctactaagtgaatcaccattggcgttcctacagggactctaccatgccacccaaatc
tcttcgagaactttacgattctgttcatcaagattaagttcattgcttagaacattgaga
atcaatgatgtgaatcaattctctggtatatcattaatcgctgattttgcaacattggtt
ggtacttataataacggatttttaatcatcattgagccttactatcaacgtcagaataat
acatatgatcagatatttcaattttgttgtttggatgcttcgattggtatgaaaccaatt
ttcgataaatatagatcagttgtgatcacaagtggtactttgtcaccattggatatctat
acgaaaatgttgaatttccgtccaaccgttgttgaacgtttaacaatgtcattaaataga
aattgtatttgtccatgtattttaacaagaggtagtgaccaaatttcaatatcaaccaaa
ttcgatgttaggagtgatacagctgtcgttagaaattatggggcattattagttgaagtc
agtgctatagtacccgatggaatcatttgttttttcacttcctatagctatatggagcaa
atcgtatcggtttggaatgaaatgggtctgttaaataatattctaaccaataagttaata
tttgttgaaacttcagatcctgccgaatcagcattggcattgcaaaactacaagaaagca
tgcgacagtggtagaggtgccgtactactttcagtggcaagaggtaaggtgtctgagggt
atcgatttcgataatcagtatggcagatgcgtcattctctatggcataccttacatcaat
accgagagtaaggtattacgtgcacgtttggaattccttagagatcgttatcaaattaga
gagaatgaattcctaacttttgatgcaatgagaactgcttctcaatgtgttggtagagtc
attcgtggtaaatccgattatggtatcatgatctttgctgataaacgttacaatcgttta
gataaacgtaataaattaccacaatggatcttacaattttgtcaacctcaacatttaaat
ctttcaactgatatggcaatttcactttcaaaaacttttttaagagaaatgggtcaacca
ttttcaagagaagaacaattaggtaaatcattatggagtttagaacatgttgaaaaacaa
tcaacaagtaaaccaccacaacaacaaaattcagctataaattcaactattacaacttct
actactactacaaccacgacttctacaatttctgaaacacatttaacataa
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