Dictyostelium discoideum (cellular slime mold): DDB_G0268410
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Entry
DDB_G0268410 CDS
T00245
Symbol
drnB
Name
(RefSeq) dicer-like protein
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
DDB_G0268410 (drnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0268410 (drnB)
03009 Ribosome biogenesis [BR:
ddi03009
]
DDB_G0268410 (drnB)
03036 Chromosome and associated proteins [BR:
ddi03036
]
DDB_G0268410 (drnB)
Enzymes [BR:
ddi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
DDB_G0268410 (drnB)
Messenger RNA biogenesis [BR:
ddi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DDB_G0268410 (drnB)
Ribosome biogenesis [BR:
ddi03009
]
Eukaryotic type
90S particles
RNase
DDB_G0268410 (drnB)
Prokaryotic type
rRNA processing factors
DDB_G0268410 (drnB)
Chromosome and associated proteins [BR:
ddi03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
DDB_G0268410 (drnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
Motif
Other DBs
NCBI-GeneID:
8616269
NCBI-ProteinID:
XP_647462
dictyBase:
DDB_G0268410
UniProt:
Q55FS1
LinkDB
All DBs
Position
1:1225333..1229934
Genome browser
AA seq
1385 aa
AA seq
DB search
MSNKSHLSEKVQLNEWLQKRKLPLSIYHTEYKGSEHNKDFKSIVIVNGKEIESDWKKTKK
ESEKDCAKRILEFLVKLDGHPVEFTLPSNRTINQNPCSILKNIDNNRNNNNTNNNNNNNN
NNNNNNNNNNNNNEIIIINDSDDDDNNSNNIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQLIQFNSEDLECLKKPMQNPLSNTQLLSSSSDEEENSSSDPIDSFSFIRKDDVLAP
TYDGPLVSTIKDNNQTYKLQSVVDLLNSKLDMMESSYQNQISIMLYSQQKLQKEVASFKS
YIESCSLKPFGTLKIPASVNQPQLNTTPKPNNQIIETNQQPPPPPPPPQDTTKKKNSYVN
KKSLKTNSGKTDDCHSFETSDSENDGIEESSTTNPFYFQSYNSYTSTYRDDDDNYDDDND
NDDDDNYDDDDSTTTTTTKALKRRGTDSNSNLTDYEIYDKSSDDIDNYDDSSKESEIEKK
ARGFSDREVIKDSIRKRRRKRYLYKSSDATTVNTVRSSYEDLATTKTTTTTTEIPSTNQF
STYFNNSQNGHNKFVQTNFDFKKIELSVVSDVVPDFISFYVYDVVISHPFHAHTYSHRGK
KYSFSNFLLYSSEQPLPTTTTTPPVIHTLNSVGDHFGVGLIKRSYCRISKSDFQKMITFH
NCFFSQILGQKYLEHSDHIDRMFMIPEVKSLSNPTLSLFDTLLELLEFDGLPDDYDLFQG
DDLDFQKIMDNLFTGKVTVSRSNHFAICRSVDFQSLSEITMSQKRQDIHNLNHFKNMLNK
LNFYKNQNEIQENQENQENQENQENQENEYEYENDYEYEYENENENENENENENENENEI
EIENENVNEYENEYENEYENENEIQIENENEYEYENEYEYENENEGKEKEIQDLLMIDLK
KENIDSDESEHSFNYISDLNNDYSDSYDDNNNNEFENNIKIKNVSLPPLVCSHACARTNE
DYWRLKCILFFDENDQVEKPLDWKVYQQSNPSFKEINLVTFLKYYKHFQKDPLTVRVLGI
TDFIHSYAKVAILPFFSEMEWSLRVAHFNSKVTCLKSAKILREVFTHPSTKTIPKRTLTQ
LGIFGKYQPYLGDNQRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLD
VSKRLGLEEILRFTTEEEFRKPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYP
IYNTKFEETLAHQEIRAFLDGIGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVL
DFFVSDFLYATFPLAQEGQLTDYRSRLVRNSNLSSISRKLCLPPTVSKGIRDTLPIKKLG
DYLESFIGCCFVDTTQSFEYTKSLVYKYLDLRIDNPLFEFPSRSAYLSIHLRSDSEDDLK
FSETD
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaatctcatttatctgaaaaggttcaattgaatgaatggcttcaaaagagg
aaattacctctatccatttatcatactgaatataaaggatctgaacataacaaagatttt
aagtcaatagttatagtgaatggaaaagaaattgaatcagattggaaaaaaactaaaaaa
gaatcagaaaaagattgtgcaaagagaattttagaatttttagtaaagctagatggtcac
cctgttgaatttacattaccatccaatagaacaataaaccaaaacccctgttctattcta
aaaaatatagacaataaccgtaataataataatactaataataataataataataataat
aataataataataataataataataataataataataatgaaattattattattaatgat
agtgatgatgatgataataatagtaacaatatacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaa
cagcaacagcaacaactaatacagttcaatagtgaagatttggaatgtttaaaaaaacct
atgcaaaatccattatcaaacactcaattattaagttcaagtagtgatgaagaagaaaac
tctagttcagacccaatagatagttttagtttcattagaaaagatgatgttttggcacca
acttatgacggtccattagtttcaactattaaagataataatcaaacatataaattacaa
tcagttgtagatttactaaatagtaaactagatatgatggagtcatcttatcaaaatcaa
attagtatcatgttatattctcaacaaaaattacaaaaagaagtagcatcttttaaatct
tatattgagagttgttctctaaaaccatttgggacccttaaaatacccgcctctgtaaat
caaccacaattaaataccacacccaaaccaaacaatcaaataatagaaacaaatcaacaa
ccaccaccaccaccaccaccaccacaagataccactaaaaagaaaaattcatatgtaaat
aagaaatccttaaaaaccaattcaggaaaaactgatgattgtcattcttttgaaacctct
gattcagaaaatgatggtatagaggaaagctctaccactaatcctttttattttcagagt
tacaactcctacacatccacctatcgtgatgatgatgacaattatgacgatgacaatgac
aatgacgacgatgacaattatgacgatgatgacagcaccaccaccacaaccacaaaagca
ctcaaacgacgaggtacagattcaaactcaaatcttaccgattacgaaatttatgataaa
tcaagtgatgatatcgacaattatgatgacagctcaaaggaatctgaaattgaaaagaaa
gctagaggattttctgatagagaagttataaaagactcaataagaaaaagaagaagaaag
agatacctctacaaatcatcagatgctaccacagtgaataccgtcagatcctcatatgaa
gatttagcaacaacaaaaacaacaacaacaacaacagaaataccctctacaaatcaattc
tccacatatttcaataatagtcaaaacggtcacaacaaatttgtacaaacaaattttgat
ttcaaaaaaatagaactttctgtcgtatctgatgtggtaccagatttcatttcattttat
gtttatgatgttgtcatttctcatccatttcatgcacatacatattcacatagaggtaaa
aaatattcattttcaaactttttattatattcaagtgaacaaccattaccaacaacaacg
acaacaccaccagttatacatactctaaattcagttggtgatcattttggtgtaggatta
attaaaagaagttattgtagaattagtaaaagtgattttcaaaagatgataacatttcat
aattgtttcttttcacaaattctaggtcaaaaatatttagagcattctgatcacattgat
agaatgtttatgataccagaagtaaaaagtttatcaaatccaactctatcactatttgat
actttgttggagttattagaatttgatgggttaccagatgattatgatctatttcaaggt
gatgatttagattttcaaaaaatcatggataaccttttcactggaaaggtaacagtatct
agatccaatcattttgcaatctgtagaagtgtagactttcaatcattatctgaaattaca
atgtcacaaaaacgtcaagatattcataatttaaatcattttaaaaatatgttaaataaa
ttaaatttttataaaaatcaaaatgaaattcaagaaaatcaagaaaatcaagaaaatcaa
gaaaatcaagaaaatcaagaaaatgaatatgaatatgaaaatgattatgaatatgaatat
gaaaatgaaaatgaaaatgaaaatgaaaatgaaaatgaaaatgaaaatgaaaatgaaatt
gaaattgaaaatgaaaatgtaaatgaatatgaaaatgaatatgaaaatgaatatgaaaat
gaaaatgaaattcaaattgaaaatgaaaatgaatatgaatatgaaaacgaatatgaatat
gaaaacgaaaatgaaggtaaagaaaaagaaatacaagatttattaatgattgatttaaaa
aaagagaatattgatagtgatgaaagtgaacatagctttaattatattagtgatcttaat
aatgattatagtgatagttatgatgataataataataatgaatttgaaaataatataaaa
attaaaaatgtatcacttccaccattagtttgttctcatgcatgtgctagaactaatgaa
gattattggagattaaaatgtattttattttttgatgaaaatgatcaagtcgaaaaacct
ttagattggaaagtttatcaacaaagtaacccaagttttaaagaaatcaatttagttaca
tttttaaaatattataaacattttcaaaaggatccattaactgttagagtattaggtata
acggattttattcattcatatgcaaaggttgcaattttaccctttttttcagaaatggaa
tggtctttgagagtggcacatttcaatagtaaagtgacatgtttaaaatcggcaaagatt
ttaagagaggtattcacccatccctcaactaaaaccattccaaagagaacactgacccaa
ttgggtatctttggcaaatatcagccttatttgggcgacaatcaaaggttggagttttta
ggcgactcagttttaaagttggtcagtactatatacctctttttcaagtatcccaaaatg
agtgaaggtttcttgtcacaaactagaagtgatttcacaaagaatgatcatttactcgac
gtttcaaaacgtcttggattagaagaaatcttacgtttcacaacagaggaagaatttagg
aaaccacaagccgatgtaattgaagcattaataggtgctgtctatattgatcgtggtttc
tttgaagcctataaactaacagtttgttggatttttgatgaacccgatgccgaatatcca
atttataatacaaaatttgaagaaactttggcccaccaagagatacgtgcttttttagat
ggaattggtgtacatattagtcattcatcattgttggaggaggcactctgctttccctat
tcgtttcattctgcctcaaaatcttaccaacgtttagagtatgtgggtgatgcagtttta
gatttctttgtatcggatttcctttatgccacctttcctttggctcaagaaggtcaatta
acagattaccgttctcgtttagttagaaactccaatctatcatcaattagtagaaaactt
tgtttacctcctactgtatcaaaaggaattcgtgatacattaccaataaaaaaactaggt
gattatttggaatcttttattggttgttgttttgttgataccactcaatcatttgaatat
acaaaatctttggtttataagtatttggatttaagaattgataatccattatttgaattt
ccttcacgttctgcctacttgtctattcatttaagatcagatagtgaagatgatttaaaa
ttctctgaaactgattaa
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