Dictyostelium discoideum (cellular slime mold): DDB_G0269192
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Entry
DDB_G0269192 CDS
T00245
Symbol
tifA
Name
(RefSeq) DEAD/DEAH box helicase domain-containing protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03013
Nucleocytoplasmic transport
ddi03015
mRNA surveillance pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0269192 (tifA)
09122 Translation
03013 Nucleocytoplasmic transport
DDB_G0269192 (tifA)
03015 mRNA surveillance pathway
DDB_G0269192 (tifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0269192 (tifA)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0269192 (tifA)
03009 Ribosome biogenesis [BR:
ddi03009
]
DDB_G0269192 (tifA)
03012 Translation factors [BR:
ddi03012
]
DDB_G0269192 (tifA)
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDB_G0269192 (tifA)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DDB_G0269192 (tifA)
mRNA cycle factors
Stress granule specific factors
DDB_G0269192 (tifA)
Spliceosome [BR:
ddi03041
]
Complex C
Other components
EJC/TREX
DDB_G0269192 (tifA)
Ribosome biogenesis [BR:
ddi03009
]
Eukaryotic type
90S particles
Helicases
DDB_G0269192 (tifA)
Translation factors [BR:
ddi03012
]
Eukaryotic type
Initiation factors
eIF-4
DDB_G0269192 (tifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
TniB
tRNA-synt_1b
CMS1
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
8617226
NCBI-ProteinID:
XP_646270
dictyBase:
DDB_G0269192
UniProt:
Q55D61
LinkDB
All DBs
Position
1:3537960..3539386
Genome browser
AA seq
405 aa
AA seq
DB search
MSHKDRRGNSSNDGSSFKLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQ
RAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVA
LALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKSLPTRHIKMMIL
DEADEMLSLGFQQQINDVYRYLPNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDEL
TLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVAS
MHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIG
RSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtcacataaagatagacgtggaaattcatcaaatgatggaagttcttttaagttaaat
gaaacttttacatcaagtgaagttgaagttaaaccaacatttgaatcaatgggattacgt
gaagaattattaagaggtatttttaattatggatttgaaaaaccatcagcaattcaacaa
cgtgcaattttaccaattattaaaggtagggatacgatcgcacaagcacaatcaggtaca
ggtaaaacagcaacattttcaattggagcattacaatgtgtagaagtgaatgtaagatca
cctcaagttttaatattatcaccaacaagagagttagcacaacaaattcaaaaggtagca
ttggcattatcagagtttatgaatattcaagtccacgcatgtgttggtggaaagaattta
agtgatgatgttaagaaattagagactggtgttcacattgttagtggtacaccaggtcgt
gtattagatatgatcactcgtaaatcacttccaactcgtcatattaaaatgatgatttta
gatgaggccgatgagatgctttcattgggttttcaacaacaaattaatgatgtatataga
tatttaccaaatggtactcaaatcgtattagtatcagctactctaacacaagatgtagtt
tcaatgactgaaaaatttatgacaaaaccagttcgtatcctattgaaacgtgatgaactc
actttggatggtatcaaacaattctttgtatctgtagagaaagaagattggaaattcggt
acactttgcgatatctacgatagtcttacaatcactcaagctgtaattttttgtaatact
aaaaagaaagtagatcaattaactgaacaaatgcgtgatgctaatttcactgtagcctca
atgcatggtgatatggtacaaaaagaaagagaagaaattattaaatcatttagatctggt
gaaaatcgtgttttaattacaacagatattttagctagaggtattgatgttcaacaagtt
tcattagttataaattatgatttaccaatagatcgtgaaaattacattcacagaataggt
agatccggtagatttggtcgtaagggtgttgcaattaatttcgttaaaaactctgacatt
agaattttaagagatattgaacaattttattctactcaaattgatgaaatgcctgtaaat
tttgcttcaatcatttaa
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