Dictyostelium discoideum (cellular slime mold): DDB_G0269932
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Entry
DDB_G0269932 CDS
T00245
Symbol
uap56
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03013
Nucleocytoplasmic transport
ddi03015
mRNA surveillance pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0269932 (uap56)
09122 Translation
03013 Nucleocytoplasmic transport
DDB_G0269932 (uap56)
03015 mRNA surveillance pathway
DDB_G0269932 (uap56)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0269932 (uap56)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0269932 (uap56)
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDB_G0269932 (uap56)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DDB_G0269932 (uap56)
Spliceosome [BR:
ddi03041
]
Complex C
Other components
EJC/TREX
DDB_G0269932 (uap56)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DDB_G0269932 (uap56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
8617372
NCBI-ProteinID:
XP_646415
dictyBase:
DDB_G0269932
UniProt:
Q55CR6
LinkDB
All DBs
Position
1:complement(3893359..3895841)
Genome browser
AA seq
428 aa
AA seq
DB search
MAETNPEVDISELAEYEEESDEEVQNDVTDTKNKTANRADTHVAMHSSGFREFLLKPELE
RVIGDCGFEHPSEVQNECIPQAILGTDVICQAKSGMGKTAVFVLSTLQQIDNNPNGITTL
VLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKPNIIIGTPGRIL
QLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRP
ICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSV
RRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVN
VVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSKEDPVLEQVQSKFVVSIKELVATP
DPSTYMSG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaactaatccagaagttgatatcagtgaattagctgaatatgaagaagagagt
gatgaagaggtccaaaatgatgttaccgataccaagaataaaactgcaaatcgtgctgat
acacatgttgctatgcattcaagtggtttcagagagttcttgttaaaaccagagttggaa
agagtcattggtgattgtggttttgaacatccatctgaagttcaaaatgaatgtattcca
caagccattcttggtacagatgtcatttgtcaagctaaaagtggtatgggtaaaaccgct
gttttcgttttatcaactttacaacaaattgataacaatccaaatggtattacaacatta
gtattatgtaatactagagaattagcatatcaaatttgtgatgaatttgatcgtttcacc
aaatatttaccaaatgttaaaactgcagtgatttatggtggtattccagttcaaacccat
aaagatttgatcaaagaaaagaaaccaaacattatcattggtaccccaggtcgtatttta
caattagcatctgaaggtgcactctcactcaaagagattaaacaattcattcttgatgaa
tgtgataccatgctcgaatcattggatatgagaaaggatgtacaaaagatcttcaaactc
atcccagccaacaaacaagttatgatgttttcagctaccctctctgataccattcgtcca
atctgtaagaagtttatgaacaatccattggaaatctacatcaatgatggtagtaaactc
actctccatggtcttcaacaatactacgtaccaatcactgaagaacaaaagaataaaaaa
ctcattgaactcttggattcattagactttaatcaagccgttattttcgtcaaatctgtt
agacgtgctgatgccttaaataagatcctccaagatattggtttcccatccatctgtatt
catcgtgacctcgatcaaaaggatcgtatcgaacaataccgtaaattcaaaaactttgaa
tctcgtatcatggttgccactaatatctttggtcgtggtatcgatattgaacgtgtcaat
gtcgtcatcaactacgatatggctgaatctgccgatacctatcttcacagagtaggtcgt
gctggtcgttttggtaccaagggtttagccatttcttttgttccttcaaaagaagatcca
gtacttgaacaagttcaatctaaatttgttgtttcaattaaagaacttgttgcaacccca
gatccaagtacttatatgtctggttaa
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