Dictyostelium discoideum (cellular slime mold): DDB_G0270320
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Entry
DDB_G0270320 CDS
T00245
Symbol
nup54
Name
(RefSeq) nucleoporin 54
KO
K14308
nuclear pore complex protein Nup54
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
DDB_G0270320 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0270320 (nup54)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
DDB_G0270320 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
PI3K_1B_p101
DUF4948
Motif
Other DBs
NCBI-GeneID:
8617680
NCBI-ProteinID:
XP_646706
dictyBase:
DDB_G0270320
UniProt:
Q55BX5
Structure
PDB
PDBj
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All DBs
Position
1:complement(4639723..4641353)
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AA seq
440 aa
AA seq
DB search
MSLFGNTTTGGGGLFGNTTTPTQTTGGGLFGNTTTGGGLFGNTATPTTGGGGLFGNTATP
TLTTGGGGGLFGNTTAPTTGGGGLFGNTPTQTTGGGLFGNTATGGGGLFGNTQQQQQQQQ
QQQQQQQQQQQQQPSTSLFSQSSLGSQSSLGSQSSLGSQSSLGSQSSLGSFGQTQQPQTS
SLFGNLQQQQQLQQPQRSIIEQKLYDFMQSISPNSLNCRFLYWFYNYQANGQLVDPNSIP
KPPNVTVDQWAYALSNNPDPSILIPVAAKSFDDLINRRMKQEETIIALDQNTQEALKRMR
DLENHLNFHIHTQLEMMRKKQIELIQRYIEVWSNLEIYQSKGKTFTTSEERIMKKIYELF
EEINQPNSIKSKVEEISNQLKLGSMEKEKIKYEISPEAVEPLYNLLKNMTISIERITNEL
EIAVKDAQILKNELYQLKKC
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtctttatttggtaatacaacaacaggtggtggtggattatttggaaatacaacaaca
ccaacacaaaccactggcggtgggttatttggaaatacaacaacaggtggtggattattt
ggaaatacagcaacaccaacaacaggtggcggaggattatttggaaatacagcaacacca
acactaaccacaggtggcggtggtggattatttggaaatacaacagcaccaacaacaggt
ggtggtggattatttggaaatacacccacacaaaccactggtggtggattatttggaaat
acagcaacaggtggtggtggattatttggaaatacacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaaccatcaacatcattattttct
caatcaagtttagggtctcaatctagtttagggtctcaatcaagtttagggtctcaatct
agtttaggatcacaatcaagtttaggttcatttggacaaacacaacaaccacaaacatca
tcattatttggtaatttacaacaacaacaacaattacaacaaccacaaagaagtatcata
gaacaaaaattatatgattttatgcaatcaatttcaccaaatagtttaaattgtagattt
ttatactggttttataattatcaagcaaatgggcaattggttgacccaaattcaatacca
aaaccaccaaatgtaacagtagatcaatgggcatacgctctttcaaataatcctgatcct
tcaatattaataccagttgcagctaaatcatttgatgatttaattaatagaagaatgaaa
caagaagaaacaattatagcattagatcaaaatacacaagaagcgttaaagagaatgaga
gatttagaaaatcatttaaattttcatattcatacacaattggaaatgatgagaaagaaa
caaattgaattgattcaacgttatattgaagtttggtcaaatttagagatttatcaaagt
aaaggtaaaacatttacaacaagtgaagaaagaattatgaaaaaaatctatgaattattc
gaagagattaatcaaccaaattcaattaaatcaaaagtcgaagaaatctcgaatcaattg
aaattaggttcaatggaaaaagagaaaattaaatatgaaatttcaccagaagccgtcgaa
ccactttataatcttttaaaaaatatgactatttcaattgaacgtataacaaatgaattg
gaaattgctgtaaaagatgctcaaattttaaaaaatgaattatatcaattaaaaaaatgt
taa
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