Dictyostelium discoideum (cellular slime mold): DDB_G0270392
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Entry
DDB_G0270392 CDS
T00245
Symbol
cpsf2
Name
(RefSeq) DNA repair metallo-beta-lactamase domain-containing protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DDB_G0270392 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0270392 (cpsf2)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
DDB_G0270392 (cpsf2)
U7-dependent histone pre-mRNA processing factors
DDB_G0270392 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Secretin_N_2
Menin
Motif
Other DBs
NCBI-GeneID:
8617733
NCBI-ProteinID:
XP_646760
dictyBase:
DDB_G0270392
UniProt:
Q55BS1
LinkDB
All DBs
Position
1:4749183..4751699
Genome browser
AA seq
784 aa
AA seq
DB search
MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL
SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEEFQQYSLDNID
SCFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHR
NEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITRDQSLFEQINRNLRDGGNVLIP
VDTAGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKFEQ
NIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLILFT
QKIPKDSLADKLIKQYSTPNGRGKCIEIVQGSRVPLTGDELLQYEMEQAKQREEKRLEQL
RKEQEEREERERLEEEEREQLLNATNQDQLQQLLQLQQQKERGIIDDSMVHMKNPFENDR
FDLLDSEFKKQSMITMFPYFEKHLKWGEYGEEDDDLILRNQDKKVEEVTMEEDEIQEQEI
PKKIITQTLRLPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKLVLIRGSEQQSQSIENYV
KENIRTKGIYIPSIGEQLDLTSDTNVYELLLKDSLVNTLKTSKILDYEVSYIQGKVDILD
GSNVPVLDLIQSIPINNNNNNNNNNNNNNNNNNNNTTMMTTTTTTTNGHDESFIGDIKLS
DLKQVLVNAGIQVQFDQGILNCGGLVYIWRDEDHGGNSIINVDGIISDEYYLIKELLYKQ
FQIV
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaattatcaaatttacagcattatctggagcaaaagatgaatcaccaccatgt
tatttattagaaattgatgatttttgtatattattagattgtggtctaagttataattta
gacttttcattattagaaccattggaaaaggttgcaaagaaaatagatgcagtattatta
tcacattcagatacgacacatattggtgggttaccatatgttgttggtaaatatggatta
acaggtacaatatatggtacaacaccagtattaaagatgggtacaatgtttttatatgat
ttatatgagaataagatgtcacaagaagagtttcaacaatatagtttggataatattgat
agttgttttggagaagatagatttaaagaattaagttttagtcagcattattcactctct
ggtaaaggtaaaggaatatcgataacaccttatttggcaggacacacaattggtgcatca
gtttggaagattacaaaaggtacttattcaattgtttacgctatcgattataatcataga
aatgaaggacatttagatagtttacaattgacaagtgatattttgaagccatctttgtta
attaccgattcaaaaggtgttgataaaacattagcattcaaaaaaacaataacacgtgat
caatcattatttgaacaaatcaatagaaatcttcgtgatggtggtaatgttttgatacca
gttgatacggctggtagagtgttggaattgttactttgtattgaaaactattggtcaaag
aataagagtttggctttatatagtgtggtgtttttaggtagattttcatttagcgtttgt
caatttgcaagatcacaattggaatttatgagttcgactgcctctgtaaagtttgaacaa
aatatagagaatccattctcatttaaacatattaaaatcttatcatcattagaggaacta
caagaattacccgatactaataaggttatattaacaagttcacaagatttagaaactggt
ttctcaagagagttatttatacaatggtgttcagatccaaagaccttaattttattcact
caaaaaataccaaaagattcattggctgacaaattgatcaaacaatattcaacacccaat
ggtagagggaagtgtattgaaattgtacaaggctcacgtgtaccattgactggtgatgaa
cttcttcaatatgaaatggaacaagctaaacaacgtgaagagaaaagattagaacaatta
agaaaggaacaagaggaacgtgaagaacgtgaaagattagaagaggaagaacgtgaacaa
cttttaaatgctaccaatcaagatcaacttcaacaactactccaattacaacaacaaaaa
gaaagaggcatcatcgatgactctatggttcacatgaagaatccattcgaaaatgataga
ttcgatctattggatagtgaatttaaaaaacaatcaatgataaccatgtttccctacttt
gagaaacatttgaaatggggtgaatacggtgaagaggacgatgacctaatactacgtaat
caagataaaaaagttgaagaagtaacaatggaagaggatgaaattcaagaacaagaaata
ccaaagaaaattataactcaaacattacgtttaccaatcaattgtaaaattcaaacaata
gattatgaaggctgctccgatggtcgttcaattaaagcaatcattcaacaaattgctcca
acaaagttggtattaattcgtggatccgaacaacaatctcaaagtattgaaaattatgtt
aaagaaaatattcgtacaaaaggtatttacattccatcaatcggtgaacaattagattta
acttctgatacaaatgtttatgaattactcttaaaagattctttagtaaatactttaaaa
acttctaaaattttggattatgaagtttcttatattcaaggtaaagttgatattttagat
ggttcaaatgtaccagttttagatttaatacaatcaattccaattaataataataataat
aataataataataataataataataataataataataataataataccactatgatgaca
acaacaacaacaacaacgaatggacatgatgaatcatttattggtgatataaaattatca
gatttaaaacaagttttggtaaatgctggtatacaagttcaatttgatcaaggtatttta
aattgtggtggtttagtctacatttggagagatgaagatcatggaggtaattcaattata
aatgttgatggtataatttctgatgaatattatttaattaaagaattattatataaacaa
ttccaaattgtttaa
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