Dictyostelium discoideum (cellular slime mold): DDB_G0271572
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Entry
DDB_G0271572 CDS
T00245
Symbol
exosc10
Name
(RefSeq) 3'-5' exonuclease
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0271572 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0271572 (exosc10)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
DDB_G0271572 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
8618039
NCBI-ProteinID:
XP_645586
dictyBase:
DDB_G0271572
UniProt:
Q55AW0
LinkDB
All DBs
Position
2:complement(601251..605014)
Genome browser
AA seq
1195 aa
AA seq
DB search
MFSNNNTFNENGTTNDRVEQFSKQLFGGLVQAAKLSNNLPSEEDYSYYETFPEFKLKMNS
LGKRLLNLAQNFVQSENPKSDLSLTDTNDVDDLSDRFSGIVDIVDGMIDKVDKTIDPKYN
QNQTNIFISSTIQPGNSKKAGNEINMFYGNNIVRPQHKFEDPFDNNNFPFLPKIRSKPNA
MVELDEVFKKSIPKEISFGKIIRSKEQEGIIFPHPYEYEINNFKYTEQQTQQCKEILARG
LDETPFTWVETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDT
LLLRSHIHMLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYPSAS
LAFLLKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKN
LGSSGTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDNSHINFAKKLNLQYS
PTQLNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIK
QHSHQLIQEILKARIEDPSKQPSFIPQLHSLLNNQSNVFYTQKQQQIQQQQIQQQQQVTA
ATVPQATTIKPIIQPPPPQQQQLQQPQQQQPIKTERSLSPVPNIKNHNSNSPVLTTDQLY
KTAKWLSSDVDNATGNGNFGQSATTHVAMVNNLQPAFQSLTSIGKKSTCVSSVNQSNHSS
TSISTNSLFDISSSGDDENHPDRKRSKRIASMVASSFEQSTYAPVFKPTQQLKSIDQQQQ
QSDNNNNNNNNNNGDGDNNQDSEITGGVSGNDDNDEMDYDDDDKSSKSSKSSRRSGNTGG
GGGGTGASNGDEESDDDDDDDDDDEEDDDDESTNNNNNKDDDEDDEEDEDIDDESDDEKD
SKHSNDSTSTSNSTTTTTTTTTANTSSSNLNNNQVPKSMQEIYQLSNMNRRRNKEKKKLK
ENSSISATTSLSTSPSSLLDSTNNPPKSKKDENASVTDTFSFLKEIGWINNEQSADSFKP
VSQQLQQQPASSATATTTTTSTLSQPQQPSPQLNTSTQSNKSQIQSIPQQIQQQTQSLAS
SSSSSTTITTTTSGVVSKKQSKQTLQQQPSQQQPIQPSQQPQQPQQQQQQFVSFDYSQVS
TIQQTNSNNPNQQQNFFNTDFQGTKKKSSSTGSVKAKSGTFVLYVLKFLLLVSYF
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaaataataatacatttaatgaaaatggtacaacaaatgatagagttgaacaa
ttttcaaaacaattatttggaggtttagttcaagcagctaaattatcaaataatttacca
tcagaagaggattattcatattatgaaacattcccagaatttaaattaaaaatgaattca
ttaggaaagagattattaaatttagctcaaaattttgtacaatctgaaaatccaaaatca
gatttatcattaactgatacaaatgatgtagatgatttatccgatcgttttagtggtatt
gttgatatcgttgatggaatgattgataaagttgataaaacaattgatccaaaatataat
caaaatcaaaccaatatttttatatcatcaactattcaaccaggaaatagtaaaaaagca
ggaaatgaaataaatatgttttatggtaataatatagttagaccacaacataaatttgaa
gatccatttgataataataatttcccatttttaccaaaaattagatcaaaaccaaatgca
atggttgaattagatgaagtatttaaaaaatcaataccaaaagaaatttcatttggtaaa
attattagaagtaaagaacaagagggtataatatttccacatccatatgaatatgaaatt
aataattttaaatatacagaacaacaaactcaacaatgtaaagagattttagcaagagga
ttagatgagacaccatttacatgggttgaaactgttagacaattggaggaattggttgaa
aagttaattcattgtcaagagattgccatcgatttggagcatcatagttatagaacttat
caagggttcacatgtttaatgcaaatttcaacacgttcagaggatttcttaattgatacc
ctgctattaagatctcacattcacatgttgaatcaggttttcacaaatccatcgattgtc
aaggttttacatggtagtgatagcgatataaaatggttgcaaagggatttcggtgtgtac
attgtaaatatgtttgacactggtcaagcctcaagaatacttgaatacccttccgcttca
ctagctttcctcttaaagttttattgtgcaatcgatgcaaataaaaaataccaattagca
gattggagaattagaaaattacctgaagaaatgattaaatacgctcgtgaagatactcat
tacttattatatatttatgatcgtttacgtaatgaattaatttcaaaaggtaataaaaat
ttaggtagtagtggtaccagtaccaacaccagtaccagtaccaccacccaattaaataat
catttattattggaagttttaagacgttcaagagaattatcattacttcgttatgaaaag
gatattttggatgataatagccatattaatttcgcaaagaaattgaatttacaatatagt
ccaactcaattgaatgtattgaaagtactctatcattggagagaaggtttagcacgtgat
gaagatgaaagtgttcgttatatcttaccaaatcaaatgatgttaacaatcgttgaaaga
caaccaacttcagtacaagaattattaactctttgttcaccaattccaccatcaattaaa
caacattctcatcaattaattcaagagattttaaaagctagaattgaagatccttcaaaa
caaccatcttttattccacaattacatagtcttttaaataatcaatcaaatgttttttat
actcaaaaacaacaacaaattcaacaacaacaaattcaacaacaacaacaagttacagca
gcaacagtaccacaagcaacaactataaaaccaattatacaaccaccaccaccacaacaa
caacaactacaacaaccacaacaacaacaaccaattaaaacagaaagatcattatcacca
gtaccaaatattaaaaatcataattcaaatagtccagttttaacaacagatcaattatat
aaaacagcaaaatggttatcaagtgatgttgataatgcaacgggtaatggtaattttgga
caatcagcaacgactcatgttgcaatggttaataatttacaaccagcttttcaatcgtta
acttcaattggtaagaaatcaacttgtgtttcaagtgtaaatcaaagtaatcactcaagt
acttcaatctctaccaatagtttattcgatatttcaagtagtggtgatgatgaaaatcat
ccagatagaaagagatccaaaagaatagcttcaatggttgcttcttcttttgaacaatca
acttatgctccagtttttaaaccaactcaacaattgaaatcaattgatcaacaacaacaa
caaagtgataataataataataataataataataataatggcgatggtgataataatcaa
gatagtgaaattacaggtggtgtaagtggaaatgatgataatgatgaaatggattatgat
gatgatgataaatcttcaaaatcttcaaaatcttcaagaagatcaggtaatacaggtggt
ggaggaggtggaacaggggcttcaaatggtgatgaggaaagtgatgacgacgacgacgat
gatgatgatgacgaagaagatgacgatgatgaaagtaccaataataataataataaagat
gatgacgaagatgatgaggaggatgaagatattgatgatgaaagtgatgacgaaaaagat
tctaaacattcaaatgattcaacatcaacttctaattcaacaactacaaccaccacgacc
accactgcaaatacaagtagttcaaatttaaataataatcaagttccaaagagtatgcaa
gaaatttatcaattatcaaatatgaatagaagaagaaataaagaaaagaaaaagttaaaa
gaaaattcatcaatttctgcaactacttcactatcaacttcaccatcatctttattagat
tcaactaataatccaccaaaatctaaaaaagatgaaaatgcttctgtcactgatactttt
tcattcttgaaagaaattggttggattaataatgaacaatctgctgattcttttaaacca
gtttcacaacaattacaacaacaaccagcatcatcagcaacagcaacaacaacaacaaca
tcaacattatctcaaccacaacaaccatcgccacaattaaatacatcaactcaatctaat
aaatctcaaatacaatcaatacctcaacaaattcaacaacaaactcaatcattagcatca
tcatcatcatcatcaactactataactacaacaactagcggcgttgtttctaaaaaacaa
tctaaacaaacattacaacaacaaccatctcaacaacaaccaattcaaccatcccaacaa
ccacaacaaccacaacaacaacaacaacaatttgtctcatttgattattcacaagtttca
actatacagcaaacaaattcaaataatccaaatcaacaacaaaactttttcaataccgat
ttccaaggaacaaagaaaaaatcttcttcaactggatcagtgaaggctaaatccggtact
ttcgtattgtatgtattaaaatttttattattagttagttatttttaa
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