Dictyostelium discoideum (cellular slime mold): DDB_G0272839
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Entry
DDB_G0272839 CDS
T00245
Name
(RefSeq) histidine triad family protein
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DDB_G0272839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0272839
Enzymes [BR:
ddi01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
DDB_G0272839
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
DDB_G0272839
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
DDB_G0272839
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
DDB_G0272839
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
DDB_G0272839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
HIT
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
8618634
NCBI-ProteinID:
XP_644956
dictyBase:
DDB_G0272839
UniProt:
Q558W0
LinkDB
All DBs
Position
2:<2148504..>2149959
Genome browser
AA seq
390 aa
AA seq
DB search
MNFKRLITTSFTNQIKNMKFKKTISFKPFDINNRIIYDKEPTIVFKDQKSCLLKDTISTT
LEDGSKELKIKIGRFTPGLDSNNNYISSDIFEININNYSNKIDLCLNGKNPTFLRRKGKI
PTKVKNWEQLLGEQLEIRKSVTLEDGDIISFLGLNGTTSSIQFTIEEDNENEKEKEKEME
LDNDNTNTESIPPITSKSTSTSTSLIDTNKIQLKKHFEDPNSKNVGLSALVYFCNKPESF
LDVVLYYDDKTVAVLDKYPKAKHHYLVIPRVEINTLDELTPSFIPMLEHMYNVADAIINE
IISKDNDDDNLKKSDFKLGFHAIPSMKRLHLHIISNDYNTKYLKNNKHWNSFTTEFYIPF
DKILNELKSNGKVKVSIKKKIKKNKKKLIH
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaaaggttgattacaacatcttttacaaatcaaataaaaaatatgaaattt
aaaaaaacaattagttttaaaccatttgatattaataatcgaattatttatgataaagaa
cctacaatagtttttaaagatcaaaaatcatgtttgttaaaagatacaatttcaacaaca
cttgaagatggtagtaaggaattaaaaataaaaattgggagatttacaccaggtttagat
tcaaataataattatatttcatcagatatctttgaaattaatattaacaattattcaaat
aaaattgatttatgtttgaatggtaaaaatccaacatttttaagaagaaaaggaaaaata
ccgactaaagttaaaaattgggaacaattattaggagaacaattggaaattagaaaatca
gtcactttggaagatggtgatataatatcttttttaggtttaaatggtacaacttcttca
atacaatttacaattgaagaagataatgaaaatgaaaaagaaaaagaaaaagaaatggaa
cttgataacgataatacaaatacagaatcaattccaccaataacatcaaaatcaacatca
acatcaacatcacttatagatacaaataaaattcaattgaaaaaacattttgaagatcca
aattcaaagaatgtaggtctttcagcattagtttatttttgtaataaaccagaatcattt
ctagatgttgttttatattatgatgataaaacagttgcggtacttgataaatatccaaaa
gcaaaacatcattatttagtaataccaagagttgaaatcaatacattggatgaattaaca
ccttctttcattccaatgttagaacatatgtataatgttgctgatgcaattataaatgaa
ataatttcaaaagataatgatgacgataatttaaaaaaatcagatttcaaattaggtttt
catgcaataccatcaatgaaaagacttcatcttcatattatctcaaatgactataatact
aaatatttaaaaaataataaacactggaattcttttactactgaattttatattcctttt
gataaaatcttaaatgaattaaaatcaaatggtaaagttaaagtaagtataaaaaaaaaa
ataaaaaaaaataaaaaaaaactaattcactaa
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