Dictyostelium discoideum (cellular slime mold): DDB_G0274361
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Entry
DDB_G0274361 CDS
T00245
Symbol
prpf38a
Name
(RefSeq) pre-mRNA processing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0274361 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ddi03041
]
DDB_G0274361 (prpf38a)
Spliceosome [BR:
ddi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
DDB_G0274361 (prpf38a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
HIND
Motif
Other DBs
NCBI-GeneID:
8619311
NCBI-ProteinID:
XP_643885
dictyBase:
DDB_G0274361
UniProt:
Q86IV3
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Position
2
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AA seq
515 aa
AA seq
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MSEDINNNIDSEDESENDNDSEVSENDTDQSDISSSNINNEKRKLKIKSIHGVNPRNLIE
KITRIKIQSHPYWKEKCIGLNEESLVDRAMALESYGGCFGGNKQPTHFLCLLLKMLQIQP
EMDIIKEFIENEDFKYVRILGAIYLRLVGKPVDIYNQLDPLYKDFRALRRKTDMGSTKVF
VDQFIEELLTTNYSCDIALPHIPSRANLIQQSLLKERESPLLALGLLDLKQIEKEEYDKI
LKLKSKSTTTSSSSSSITTTTTTTTIENENENEKHKEKHKEKHKENENENENKRYKEKDN
KDGEKERYIDRDKYRDRDRDSYRDRDNYKYDDNDRDRSTKYHKDSNRDRDRDRYRDIDRE
PKRDEYYRMDRDDRYRDSDSYRDRDRYRNRDRERDREREGERDRNYRDEYDRYKSKDRYD
NEDDFNNRNKSIRDRNGYKRDYSDISSQNDKKLSSPSTSDNEEGSISTSVKKKKDISKYE
KQQTTTANDNNVPNEKTEIEQMNELRAKLGLKPLK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggatatcaataataatatagatagtgaagatgaaagtgaaaatgataatgat
tcagaggtatcagagaatgatacagaccaaagtgacatatcatcatctaatataaacaat
gaaaaaagaaaattaaaaataaaatcaattcatggtgttaatccaagaaatttaattgaa
aaaattacacgtataaaaattcaaagtcatccttattggaaagaaaaatgtattggttta
aatgaggaaagtttagtagatagagctatggcattagaatcatatggtggttgttttgga
ggtaacaaacaaccaacacattttttatgtttattattaaagatgttacaaattcaacca
gagatggatataattaaagagtttatagagaatgaagattttaaatatgttagaatttta
ggggcaatctatttaagattggttggcaaaccagtggatatctataatcaattggatcca
ttatataaagattttagagcattaagaagaaaaactgatatgggttcaacaaaggttttc
gtcgatcaattcattgaggagttacttactactaattactcttgtgatattgcattacct
catataccttcaagagcaaatttaattcaacaatctttactcaaagaaagagaatcacct
ctattggctttgggtttattagatttaaaacaaattgaaaaggaggaatatgataaaatt
ttaaaattaaaatcaaaatcgacaacaacatcatcgtcatcatcatccatcaccaccacc
accaccaccaccaccattgaaaatgaaaatgaaaatgaaaaacataaagaaaaacataaa
gaaaaacataaagaaaatgaaaacgaaaatgaaaataaaagatataaagaaaaagataat
aaagatggggaaaaggaaagatacatagatagagataagtacagagatagagatagagat
agttacagagatagagataattacaaatatgatgacaatgatagagatagatccacaaaa
tatcataaagactccaatcgagatagggatagagatagatatagagacatagatagagaa
cctaaaagggatgaatactacagaatggatagagatgaccgatatagagatagcgatagc
tatagggatagggataggtatagaaacagggatagagaaagagatagggaaagagaaggt
gaaagagatagaaattatagagatgaatatgatagatataaaagtaaagatagatatgat
aatgaagatgatttcaacaatagaaataaatcaattagggatagaaatggatataaaaga
gattatagtgatatttcttctcaaaatgataaaaaactatcgtcaccatcaacatcagac
aatgaagaaggatcaatttcaacaagtgtaaaaaagaaaaaagatatctcaaagtatgaa
aaacaacaaactacaacagccaatgataataatgtacccaatgaaaaaacagaaattgaa
caaatgaatgaattaagagcaaaattaggtttaaaaccattgaaataa
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