Dictyostelium discoideum (cellular slime mold): DDB_G0275517
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Entry
DDB_G0275517 CDS
T00245
Symbol
gtf2h3
Name
(RefSeq) general transcription factor IIH, polypeptide 3
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03022
Basal transcription factors
ddi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DDB_G0275517 (gtf2h3)
09124 Replication and repair
03420 Nucleotide excision repair
DDB_G0275517 (gtf2h3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddi03021
]
DDB_G0275517 (gtf2h3)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0275517 (gtf2h3)
Transcription machinery [BR:
ddi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DDB_G0275517 (gtf2h3)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DDB_G0275517 (gtf2h3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
8620205
NCBI-ProteinID:
XP_643618
dictyBase:
DDB_G0275517
UniProt:
Q86IB5
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All DBs
Position
2:6059895..6061338
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AA seq
372 aa
AA seq
DB search
MNNEGSAVINEDDDTSLLVVILDCNVYSWGNREKSLQDAISGMNDDNDSSSRYNGSTTIG
NNNNNNNNNNSNNNNNVNKRLINTSKNNYIGFNKFLEHFMVFINAYLMLNQENQLAIICS
KIGESSFVFPQSNIDQYQQEQQELEQRQLNENGELLPTPNKTIQGQILAKLQKLDLEIKH
DQTDILSSSFSASMSIALCYINRIKRETPTIKPRILVFNISPDVSSQYISVMNCIFSSQK
QSIPVDSCILSQSDSTFLQQASHLTSGIYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPT
LKSVDYRASCFCHKRIVDIGYVCSVCLSIFCGHSSSCSTCGTKFSLKIDLRKQLNNNPTT
TTSATSTVNNKS
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgaaggatctgcagttataaatgaagacgatgatacaagtttattagtagtt
attttagattgtaatgtttattcatggggtaatagagagaaatcattacaagatgcgata
agtggtatgaatgatgataatgacagtagtagtagatataatggtagtacgacaataggg
aacaataataacaacaacaataacaataatagcaacaacaataataatgtaaataaaaga
ttaatcaatacaagtaaaaacaattatataggattcaataaatttttagaacactttatg
gtatttataaatgcatatttaatgctaaatcaagagaatcaacttgcaatcatttgttct
aaaattggtgaaagttcattcgttttcccacaatcaaatattgatcaatatcaacaagaa
caacaagaacttgaacaacgacaactaaatgaaaatggtgaactattaccaacacccaat
aaaactattcaaggtcaaatattagctaaattacaaaaattagatttagaaataaaacat
gatcaaactgatatattatcttcaagtttctctgcttccatgtcaattgctttatgttat
ataaatagaattaaaagagaaacaccaacaattaaaccaagaattttagtatttaatata
tcaccagatgtttcatcacaatatatatctgtaatgaattgtattttttcatcacaaaag
caatcgatacccgttgattcttgtatactttctcaatcagattcaacatttttacaacaa
gcttcacatttaacgagtggtatttatttaaaaccacaaaaacaagaattattatcacaa
tatttattgactacatttttattagatacattatcaagaaaatcattagcatatccaaca
ttaaaatcagttgattatagggcatcatgtttttgtcataagagaattgtggatattggt
tatgtttgttcggtttgtttatcgattttttgtggtcactcatcatcatgttcaacttgt
ggaactaaattctctttaaaaatagatttaagaaaacaattaaacaataatcccaccact
actacttctgcaacctcaacagtaaataataaatcatag
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