Dictyostelium discoideum (cellular slime mold): DDB_G0275633
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Entry
DDB_G0275633 CDS
T00245
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0275633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0275633
03041 Spliceosome [BR:
ddi03041
]
DDB_G0275633
03009 Ribosome biogenesis [BR:
ddi03009
]
DDB_G0275633
03016 Transfer RNA biogenesis [BR:
ddi03016
]
DDB_G0275633
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DDB_G0275633
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
DDB_G0275633
Spliceosome [BR:
ddi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
DDB_G0275633
Complex C
U4/U6.U5 tri-SnRNP related factors
DDB_G0275633
Ribosome biogenesis [BR:
ddi03009
]
Eukaryotic type
Pre-60S particles
Helicases
DDB_G0275633
Transfer RNA biogenesis [BR:
ddi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
DDB_G0275633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
8620161
NCBI-ProteinID:
XP_643574
dictyBase:
DDB_G0275633
UniProt:
Q86IE2
LinkDB
All DBs
Position
2:<5972320..>5975825
Genome browser
AA seq
1128 aa
AA seq
DB search
MEDDDLFSVFDTKKTNKNKRTREATAAADEKENGKWIKPEESTTTTTTTTATTNKNEIES
NKTLNPNVKPLGALPNNSKIESMDTFKNTVGSVDLMSLDEEIQRNKKQKGGNTKQAVADI
SFNAKQSDTTLDKLRENVEKKEREELSMIEQQKQQNIIPENRTATGGYITAAGTSKSCIH
EVLLPPGEVNDDPNLYNPPEPIKPARTYPFKLDPFQATSIACIERNESVLVSAHTSAGKT
VVAEYSIATALRDGQRVIYTSPIKALSNQKFRDLQETFQDVGLMTGDITINANASCLVMT
TEILRSMLYRGSETMREVSWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPN
AREFAAWIAKIHKQPCHVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLS
NLQQPEMGGQSGASRKRGGGNKGPSDCYKIVKMIMERNYQPVIIFSFSKKECETYALQMS
KLDFNNDDEKNAVETIFNNAIDSLSESDKQLPAVINILPLLKRGIGIHHAGLLPILKEII
EILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGEGMRWISGGEYIQMSGRAGRR
GLDERGIVILMVDEKMEPAIAKGMVKGQADRLTSSFWIGYSMLLNMLRVEDIDPENLLKR
SFHQYQQESFIPQLVDKCDQMEQEKKEIIIRDETSVTEYSSIKAQLAKLREAMRDFINQP
TYVQPFLTAGRIVRIREGSTDWGYGVILNFSKRPIKSSGSGVSDKSFEVIADILLECAIS
SDPTSNGGYIGTPKPCVPGEVGEGQIIPVSIKLFDGITSVCLYVKKEQPTQEFKTHLFKT
LKETENRFKKDGGIPLIDPIEDMKIKDPNFKKLIKKIETLESRFSSTACFNDTDIEERCN
LLEKKNEITKEIKQLQKQIKSGDEVILKDDLRSMKRILTRLGYITDDGVVALKGRVACEI
SAGDELVISELLFAGLFNDLSVEQCVAVFSCFVFQNEGSANNDVNNPKIKPDLVPLYRVI
RDTASKVVTVSQECKLTSVDEKTYLASFNPNFMDVTFAWASGASFADIVKMTDTFEGNLI
RGIRRLDELIRQMVIASKSIGNTELEAKFSEATVKIKRDIPFAGSLYL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgatgatttattttcagtttttgatacaaagaaaacaaataaaaataaaaga
acaagagaagcaactgctgcagcagatgaaaaagaaaatggtaaatggataaaaccagaa
gaatcaacaacaacaactacaactacaacagcaacaacaaataaaaatgaaattgaaagt
aataaaactttaaatccaaatgttaaaccattaggagcattaccaaataattcaaagatt
gaatcaatggatacatttaagaatacagtaggatcagttgatttaatgtcattagatgaa
gagattcaaagaaataagaaacaaaaaggtggtaatactaaacaagcagtagcagatatt
agtttcaatgcaaaacaatctgatactacattggataaacttagagagaatgttgaaaag
aaagagagagaggagttatcaatgattgagcaacaaaaacaacaaaatataataccagag
aatagaacagcaacaggtggatatattacagcggcaggtacatctaaatcgtgtatacac
gaggtactattgccacctggcgaggttaatgacgacccaaatctatataacccaccagaa
ccaatcaaaccagcacgtacatatccatttaaattggatccatttcaagcgacatcgatt
gcatgcatagagagaaatgagtcggttttagtatcagcacatacatcagcaggtaagact
gtggttgcagagtattccatcgccaccgcattgcgtgatggtcaacgtgttatctataca
tcacccattaaagcattgtcaaatcaaaagtttcgtgatcttcaagagacctttcaagat
gttggtttgatgactggtgatatcacgatcaatgcaaatgcatcatgtttggttatgacc
acagagattttacgttcaatgctttatcgtggctctgaaaccatgagagaagtttcatgg
gtaattttcgatgagattcattatcttcgtgataaagagagaggtgtagtttgggaggag
acaatcattctcttaccagattcagttaaatttgttttcctctctgcaaccattccaaat
gcaagagagtttgctgcatggattgcaaagattcataaacaaccatgtcatgttgtctac
actgaataccgtccaattccattacaacattatattttcccatctggtggtgatggttta
catttggtagtcgatgaaaatggtgttttcagagaagagaatttcttaaaatcattatca
aatctacaacaaccagaaatgggaggtcaaagtggtgcctcgagaaagaggggtggcggc
aataaaggtccatcggattgttataaaatcgtaaagatgattatggagagaaattatcaa
ccagttattattttcagtttttcaaagaaagaatgtgaaacctatgctttacaaatgtca
aaattggatttcaataatgatgatgaaaagaatgcagtggaaaccatctttaataatgca
atcgattccctttctgaaagtgataaacaattaccagcagtcattaacattttaccctta
ttaaaacgtggtattggtatacatcatgctggtcttttaccaatcctaaaggagatcatt
gaaattctcttccaatatggttatatcaaggcattgtttgcaactgaaactttctccatt
ggtttgaatatgcctgctaaaactgtaattttcacatcggttagaaagtttgatggtgag
ggtatgagatggattagtggtggtgaatacattcaaatgagtggtagagcaggtcgtaga
ggtctcgatgaaagaggtatagtaattttaatggttgatgaaaagatggaacctgccatt
gcaaagggtatggtaaaaggtcaagcagatcgtttaacaagtagtttttggattggttat
agtatgcttttgaatatgctacgtgtcgaagatatagatccagagaatttattaaaacgt
tcattccatcaatatcaacaagaatcattcataccacaattggttgataaatgtgatcaa
atggaacaagagaaaaaagagattataattcgtgatgaaacatcagttacagagtattcc
tcaattaaagcacaattagctaaattacgtgaagcaatgcgtgatttcattaatcaacca
acctatgttcagccattccttacagctggtagaatcgtacgtattagagaaggttcaacc
gattggggatatggtgtaattttaaatttctcaaagagaccaattaaatcaagtggtagt
ggtgtctctgataaaagttttgaagttattgcagatattctattggaatgtgcaatctct
tcagatccaacatcaaatggtggttacattggtacaccaaaaccatgtgtccctggcgaa
gtaggtgaaggtcaaatcataccagtatcaattaaacttttcgatggtatcacctctgtt
tgtctttacgttaaaaaagaacaaccaacacaagaatttaaaactcatttatttaaaacc
ctcaaagaaactgaaaatagatttaaaaaagatggtggtataccattgatcgatccaatc
gaggatatgaaaattaaagatccaaactttaaaaagttaatcaagaaaattgaaaccttg
gaaagtagattctcatcaactgcttgtttcaatgatacagatatcgaagaacgttgtaac
cttttggagaagaagaatgaaatcaccaaagagattaaacaattacaaaaacaaattaaa
agtggtgatgaagtcattctaaaggatgaccttcgttcaatgaaacgtattttaacccgt
ttaggttatataacagacgatggtgtcgttgccttgaaaggtcgtgttgcctgcgaaatt
agtgcaggtgatgaattggtaattagtgaacttttattcgctggtttattcaatgattta
tcagttgaacaatgtgttgccgttttcagttgtttcgtattccaaaatgaaggttccgcc
aataacgatgtcaataatccaaaaataaaaccagatttggtacctttatatcgtgtcatt
agagataccgcttcaaaagttgtaacagtatctcaagaatgtaaattaacctcagtcgat
gagaaaacctatttggcttcttttaatccaaactttatggatgtaacatttgcttgggca
agtggcgcctcttttgctgatatcgttaaaatgaccgatacctttgaaggtaatctcatt
cgtggtattcgtagattagatgaactcattagacaaatggtaattgcttcaaaatcaatt
ggtaatactgaattagaagctaaattctctgaagcaaccgttaaaattaaaagagatatt
ccatttgctggttctttatatttatag
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