Dictyostelium discoideum (cellular slime mold): DDB_G0275809
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Entry
DDB_G0275809 CDS
T00245
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DDB_G0275809 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0275809 (msh2)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
DDB_G0275809 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF3982
Motif
Other DBs
NCBI-GeneID:
8619985
NCBI-ProteinID:
XP_643399
dictyBase:
DDB_G0275809
UniProt:
Q553L4
LinkDB
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Position
2:complement(5513128..5516287)
Genome browser
AA seq
937 aa
AA seq
DB search
MSDNEQEESSQVVLKEDKTFVTFFQSLVSSNEDTDTIRLFDRKGYYSIHGEDAVFVAMMH
FKSKKSLKYWSISDPNPKKKIKIDNDGSLTTTASSSQQQQQELGLAVLTIRQGYEFENIV
KELLDEKKKIEIWSMKPNSKQQWELIKKGSPGNTQMFEDVLLNGNCEGSVMMALKVTREK
GSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQKNYDYQKVKEK
LSDAGIPFTELPKSDFSSKNAEQDLTRLLGSVKNNLPDIEQEHAIQSASCLIKHLDLLSN
PNYFGKFKLEKYDLDRYMKLDSSSFKGLHIIDLKDSSVSAAAGGGGAGGASSSSNKDQSL
YNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGD
LDRLSKKLHGQKATLEDCVNLYGIVTRLPVVLQSLNNHSSIHQELIKVNFIESLESIISD
FAKFCAMVEKTIDLDLANDKHEYVIRSSFDETLRGIQLKKDQISNKIERFRVDIADDLNL
DEAKVKLHYSEKDMFLLRISRKDEVAIRDKKKYIVHATAKDGVRFATREIDTLNEAYKKW
SAEYLDKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTLSHVSSIAPIPFIRPEIIP
LGSDENGAGTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQV
GLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKN
SLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHV
SASTQNNTFTLLYKVEQGPCDQSFGIHVAILANFPSQVIENAKQKAKELESFESNTLKQN
HNKFLEEFKEINFNSNDVEKSLSLVNSLLNKYSIDIN
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatgaacaagaagaatcatcacaagtagtattaaaggaggataaaaccttt
gttacattttttcaaagtttagtatcctctaatgaagatacagacacaattagattattt
gatagaaaaggatattactcaattcatggtgaagatgcagtatttgtagcaatgatgcat
tttaaatcaaagaaatcattaaaatattggagtattagtgatccaaatccaaaaaagaaa
attaaaattgataatgatggttcattaacaacaactgcatcatcatcccaacaacaacaa
caagaattaggattagcggtattaacaattagacaaggttatgaatttgaaaatatagtt
aaagaattattagatgaaaagaaaaagattgaaatttggtcaatgaaaccaaatagtaaa
caacaatgggaactaattaaaaaaggctcaccaggtaatacacaaatgtttgaagatgtt
ttattgaatggtaattgtgaaggatcagttatgatggcattaaaagtcacaagagagaaa
ggttcaatcgtatttggtatatcatttggtgatgctactttcaagacaattggtgtttca
caatttatggataatgataatctatcgaatctttcaagttttataatgcaaatgagtgta
aaggaatgcttgttatgttgtgatcaaaagaattatgattatcaaaaagttaaagagaaa
ttatcagatgcaggtataccattcacagaattaccaaaatcagatttctcctcaaagaat
gccgaacaagatttaactcgtttattgggttccgttaaaaataatttaccagatatcgaa
caagagcatgccattcagtctgctagttgcttaattaaacatttggatttactttcaaat
ccaaattattttggtaaattcaaattggaaaaatatgatttagatagatatatgaaatta
gattcttcatcatttaaaggtttacatattattgatttaaaagattcttcagttagtgca
gcagcaggtggtggtggtgcaggtggagcatcatctagttcaaataaagatcaaagttta
tataatttattaaatcaatgtaatacaccaatgggatcaagattattattacaatgggta
aagcaaccattattaaatgcagaggaaatcgaagcaagattaaattttgtagaggcattt
tataatgatttggagttacgtcaatctttaagatcaaatgatttgaagaaaattggtgat
ttagatagattatcaaagaaattgcatggtcaaaaggctacattggaggattgtgtcaat
ttgtatggtattgtcactagattaccagtggtattgcaatcattgaataatcatagtagt
atacatcaagagttgattaaagttaatttcatagagagtttagagtctattatatcagat
tttgctaaattctgtgcaatggttgaaaaaaccatcgatttagatttggccaatgacaaa
catgaatatgttattagatcaagtttcgatgagacattacgtggtattcaattgaagaaa
gatcaaatttcaaataaaatcgaacgatttagagttgacattgctgatgatttgaattta
gatgaagcaaaagttaaattacattatagtgaaaaggatatgtttttattgagaatctca
agaaaggatgaggttgcaattagagataaaaagaaatacattgttcatgcaaccgctaaa
gatggtgtaagatttgccactagagaaatcgatactctaaatgaagcctataagaaatgg
tcagcagagtacttggataaacaagatggtcttgcaaagagaacccttcaaattgcagct
tcattcgtacctttgattgaagatttatcatcattaattgcaacattggatgtatttgta
actttaagtcatgtatcttcaattgcaccaatcccattcattagaccagagattatacca
ttaggtagtgatgaaaatggtgctggcactgttattattggtggtcgtcatccatgtgta
gaaattcaagataatgttaatttcattgcaaatgatattgatttaactcgtggtcaatcc
caatttcaaattataacaggaccaaatatgggtggtaaatcaacatttattcgtcaagtt
ggattaatagtattaatggcacaaattggttgttttgtaccagcacaaaaagcaacaatt
gcagttgtcgattgtattttatcaagagttggtgcaggtgatagtcaattacgtggtgtt
tcaacatttatggcagaaatgttagagacatcttacattttaaaggttgcaactaaaaat
tctttaatcattattgatgaacttggtagaggtacttcaacatatgatggttttggttta
gcttggggtattgcagagtatatttgtaatcaaattggtggtttctgtctatttgcaact
catttccatgaattgacaattctatcagatttacttccaatggttaaaaatttacatgtt
tcagcttcaacccaaaacaatacttttactttactctataaagttgaacaaggtccttgt
gatcaaagttttggtattcatgttgcaattttagcaaatttcccttcacaagttattgaa
aatgcaaaacaaaaagcaaaagaattggaatcttttgaatcaaatacacttaaacaaaat
cataataaatttttggaagaatttaaagaaattaatttcaattcaaatgatgtagaaaaa
tcattaagtttagttaatagtttattaaataaatattcaatagatatcaattaa
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