Dictyostelium discoideum (cellular slime mold): DDB_G0275957
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Entry
DDB_G0275957 CDS
T00245
Symbol
sf3b1
Name
(RefSeq) HEAT repeat-containing protein
KO
K12828
splicing factor 3B subunit 1
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0275957 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ddi03041
]
DDB_G0275957 (sf3b1)
03036 Chromosome and associated proteins [BR:
ddi03036
]
DDB_G0275957 (sf3b1)
Spliceosome [BR:
ddi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
DDB_G0275957 (sf3b1)
Complex B
DDB_G0275957 (sf3b1)
Complex C
U2 SnRNP specific factors
DDB_G0275957 (sf3b1)
Chromosome and associated proteins [BR:
ddi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
DDB_G0275957 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT
HEAT_EF3_N
Htt_N-HEAT_1
HEAT_2
HEAT_ECM29
XMAP215_CLASP_TOG
Adaptin_N
CEP104-like_TOG
UNC45-central
Motif
Other DBs
NCBI-GeneID:
8620270
NCBI-ProteinID:
XP_643385
dictyBase:
DDB_G0275957
UniProt:
Q86JC5
LinkDB
All DBs
Position
2:complement(6197621..6200891)
Genome browser
AA seq
1051 aa
AA seq
DB search
MSDQQDQTMSEWDDTTLNKAKVVEATPRRNRWDETPVSKPSTGVEETPKRRSRWDETPIN
INSGGLSGGVTPNYNAMSNGGVTPIFNNMMDGGVTPVYNSNNNNNSNSNGGSNNNKNILM
QTPDPYQAQLQKEIDERNRPWTDEELDNILPSEGYEILQPPANYQPVIASKKLTASTPIG
AAGTSGGFFIQEEQSRGQDFGIIDAPDGITIKPEDKVYFEKILQEGGDNDEHLSPEEQKE
RRIMKLLLRIKNGTPPMRKQALRQLTDKAREFGPAPLFNQILPLFTSTSLEDQERHLLVK
VIDRILYKLDDLVRPYVRKILSVIEPFLIDQNYYARVEAREIISNLSKAAGLASMTSTMR
PDIDSPEEDIRNTTARAFAVVASALGIPSLMPFLKAVCKSKKSWQARHTGIKIVQQIAIL
MGCAILPHLKNLVVIVEHGLTDEQPKVRTITALAISALAEAATPYGIESFDSVLKPLWYG
IRQYREKGLAAFLKAIGYIIPLMESSYASYYTKEVMTILVREFKTNEDEMKKIVLKVVKQ
CVATEGVESSYVREEIIPEFFKQFWVRRMALDKRNYKLLVETTLEIANKVGGGEIIERIV
DDLKDESEAYRRMVMEAIEKIVSTLGASDISPTLEERLIDGILYAFQEQTTDETSIMLQG
FGTVVLALNTRIQPYLQQIAGTIKWRLNNKSAKVRQQAADLISRIAVVMMNCGEEQLLSH
LGQILYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQE
NCIDLVGRIADRGSDFVSDREGMRICFELLDMLKAHKKGIRRAAVNTFGYIAKAIGPQEV
LATLLNNLKVQDRQNRVCTTVAIAIVAETCAPYTVLPGLINEYRIPELNVQNGVLKSLSF
LFEYIGEMGKDYIYAVTTLLEDALMDRDAVHRQTACSAIKHISLGVMGLGCEDSLTHLLN
YVWPNVFETSPHVINAFLEAVEGLRFALGPNTILQYTLQGLFHPSRKVRNIYWKLYNMLY
ISSQDALTPCYPRTLDENDNKYQRYELDFVI
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcaacaagatcaaacaatgtcagaatgggatgacacaacattaaataaagca
aaagttgttgaagcaacaccaagaagaaataggtgggatgaaacaccagtaagtaaacca
agtacaggtgtagaggaaacaccaaaaagaagatcaagatgggatgaaacaccaataaat
ataaatagtggaggattgagtggtggagttacaccaaattataatgcaatgagtaatggt
ggtgtaacaccaatttttaataatatgatggatggtggtgttacaccagtatataatagt
aataataacaacaacagcaatagcaatggtggtagtaataataataaaaatatattaatg
caaacaccagatccatatcaagcacaattacaaaaagagattgacgaaagaaatagacca
tggacagatgaggaattggataatatattaccatcggaaggatacgaaattttacaacca
ccagcaaattatcaaccagttatagcaagtaaaaaacttacagcaagcacaccaattggt
gctgcaggtacaagtggtggatttttcatacaggaggagcaaagtaggggtcaagatttt
ggtatcattgatgcacccgatggtatcacaattaaaccagaggataaggtttactttgaa
aagattttacaagagggtggtgataatgatgaacatctctcaccagaggagcaaaaggag
agaagaattatgaaactattattaagaattaagaatggtacaccaccaatgcgtaaacaa
gctttaagacaattgactgataaagcaagagaatttggaccggcaccattgttcaatcag
atattaccattattcacctccacctcattggaggaccaagagagacatttattggtaaag
gtgatcgatcgtattctctacaaattggatgacttggtcagaccatatgttagaaagatt
ctatcagttattgaaccatttttaattgatcagaattattatgctcgtgttgaggcaaga
gaaatcatatcaaatctttcaaaagccgctggtttggcaagtatgacatcaacaatgaga
cctgatatcgatagtccagaggaagatattcgtaatacaaccgcaagggcatttgctgtg
gttgcatctgcattgggtattccatcattgatgccattcctcaaggcggtatgtaagagt
aaaaaatcatggcaagcacgtcacactggtataaagattgttcaacaaattgccattcta
atgggttgtgccattttaccacatttaaagaatcttgtagtcattgttgaacatggttta
accgatgaacaaccaaaggtacgtaccataacagcattggcaatctctgcattggcagag
gcagcaaccccctatggtatagagtcatttgatagtgttttgaaaccactttggtatggt
attcgtcaatatcgtgaaaaaggtttagcagcatttttaaaagcaattggttatatcatc
ccattgatggaatcttcatatgcaagctattacaccaaagaggttatgactattttagtt
cgtgaatttaaaaccaatgaagatgaaatgaagaaaatcgtattaaaagttgtcaaacaa
tgtgttgccaccgagggtgttgaatcatcctatgttcgtgaagagattattccagagttt
ttcaaacaattttgggttagaagaatggcattggataagagaaactataaactattggtt
gaaacaacacttgaaattgcaaataaagttggtggtggtgaaattattgaaagaattgtt
gatgatcttaaagatgaatccgaagcctatagaagaatggtaatggaggcaattgaaaag
atagtttcaacattgggtgcatcggatattagtccaacattggaggagagattaatcgat
ggtattctctatgcattccaagaacaaaccaccgatgaaacttcaattatgttacaaggt
tttggtactgttgtattggctttgaatactcgtattcaaccttatcttcaacaaatcgct
ggtaccattaaatggagactcaataataaatctgcaaaggttagacaacaagcagccgat
ttaatctcacgtattgctgtggttatgatgaattgtggtgaagagcaactcttgtcacat
ttgggtcaaattctttatgaatatttaggtgaagagtatccagaggtattgggttcaatc
ctaggtgcattgaaggccattgtaaatgtaattggtatgactaagatgacaccacccatc
aaagatcttttaccacgtttaacaccaattttaaagaatcgtcatgagaaagttcaagag
aattgtatcgatttggtgggtcgtattgccgatcgtggttctgatttcgtttcagacaga
gagggtatgcgtatttgtttcgaacttttagatatgttgaaagctcataaaaaaggtatt
cgtcgtgccgctgtaaatacatttggttacattgcaaaagctattggtcctcaagaggta
ttggcaaccctattaaacaatttgaaagttcaagatcgtcaaaacagagtttgtacaacc
gttgccattgccattgttgcggaaacttgtgcaccttataccgttttaccaggtctaatc
aatgaatatcgtattccagagttgaatgttcaaaatggtgttttgaaatctttatctttc
ctctttgaatatattggcgaaatgggtaaagactatatttacgccgtaactaccctactc
gaagatgcactcatggatagagatgctgtacatcgtcaaaccgcttgctctgcaattaaa
catatttcattgggtgtaatgggtttaggttgtgaagattcactcactcatttactcaat
tacgtttggccaaatgttttcgaaacttctccacatgttatcaacgctttcttagaggcc
gttgaaggtttacgttttgctttaggtccaaatactattcttcaatatacccttcaaggt
ttattccatccatctcgtaaagttagaaatatttattggaaactttataatatgctttat
attagttctcaagatgctttaacaccatgttatccaagaactttagatgaaaatgataat
aaatatcaaagatatgaacttgattttgtaatttaa
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