Dictyostelium discoideum (cellular slime mold): DDB_G0277211
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Entry
DDB_G0277211 CDS
T00245
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0277211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0277211
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DDB_G0277211
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
DDB_G0277211
mRNA degradation factors
3'-5' decay
Ski complex
DDB_G0277211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4-like_stalk
Ski2_N
MTR4_beta-barrel
Helicase_C
TFIIA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
8620875
NCBI-ProteinID:
XP_642686
dictyBase:
DDB_G0277211
UniProt:
Q86K90
LinkDB
All DBs
Position
2:complement(7627913..7632171)
Genome browser
AA seq
1378 aa
AA seq
DB search
MIELNIDSFLEELNNLENITSTNTTPVNKSNSSIKNNSNNTNVESFDLPNWYVNPTGLSA
QPEITPIAPQSSIISPTIPNNCIQLFNFSDKEEILSDIRREYLDFSIESHKLNDDDEQKR
QSYLIWPRNIDTDSWDFKLLAERTLSIPCSTVELVIDKIQYSISITNYHEVFLNTEKTSS
NSTSLDRPWSNSISKDNFHRGNTSNLPFLPGGIKSPNNNSTNSTNNNNQTPIDWVQFWHS
KSLLVKPPGLDNGILDFNENINKQDNKQQQQQQQQQQQQQQQQQQQQEKEKEEEEEVNLR
YTLKDLEREIEEERKREEAEEAEVYEDDDQEDDLDIEEEELDELDDIEKTKEEIDDIIKS
PPQPTSSSLSTSSSSSSTTLKDKNKIEIEIEEETKRKEEESKKEKQWAFLEQKEITSPLS
DLITNPAIEYPFDLDSFQKQAIVHMEQGESVFITAHTSAGKTVIAEYAIAMAAKNMTRAI
YTSPIKALSNQKFRDFKNTFNDVGLITGDVSISPSSSCLVLTTEILRSMLYKGADLIRDI
EWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATVSNPLEFAQWIGRTKQLPIYV
IGTTKRPIPLEHYIHTPSNELFKIVDSNRNFLPSGYNSAYNSLYKTDNNKGGGGGGRGGH
NQQQQQRGGSGNNISGWSKLINTLKDKQQLPVIIFSFSKNKCQEYAGSLGQSVNLTQGNE
KSQIRVFIEQSLGRLCEDDKSLPQILQMKELLERGIGVHHGGLLPIVKELVEILFSKSLV
KVLFATETFAMGVNMPAKTVVYSSTRKHDGITFRDLIPGEYTQMSGRAGRRGLDKVGTVI
ITYWKDIPEQATIESMILGTPSRLNSQFRLTYNMILNLLRVPDFKVEDMIKRSFSEFSSQ
KELPGIEKQIEKLQQQQKQLAQVDCILGEPDIDHYYKLFSQAKKYNQQIQNIILNLPNDN
HLSIGRVVVLSTSSNIEKEVNDDDDDDDDNNDDDEIFENEKYTIGLILECKSTLIKQYTN
TKVDRVFKIFSLKLKIENDIVLCVGNEIITSSGGKEIMKVCNEKLQLKQSDLKSILAGAE
SGGESEILINSLEQQLLRLIEEYPLPLGPKSIDPIKQLKLKDVDFVSTYDHLQSIEKLIP
ESKCHKCPRLHDHYEQTEKRYQLQYAIRDAKYTASDENLKLMPQFNIRLDILHELGYIDD
ENTVTLKGRVSREINTCEDLVITELIFENAFINLEPSEVVSVLSCLIFQEKDAVQPSLTP
RLEEAKQNLIKTAEKTYKVESDKGLDVVPDDKLETTLKFGLMQVVYEWARGTPFNDICTL
TNVLEGSIVRAITRIGETCQEVRNAARVIGDTKLLQKMEEAMRLIKRDIVFTSSLYVN
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgatagaattaaacattgattcatttttagaagaattaaataatttagaaaatataaca
tcaacaaacactacaccagtaaataaatcaaatagtagtattaaaaataatagtaataac
acaaatgtagaatcctttgatttaccaaattggtatgtaaatcctacaggtttatcagct
caacctgaaattacaccaattgctcctcaatcatcaataatttcaccaaccattccaaat
aattgtatccaattatttaatttttcagataaagaagaaatattatcagatataagaaga
gaatatttagatttttcaattgaaagtcataaattgaatgatgatgatgaacaaaagaga
caatcatatttaatatggccaagaaatattgatactgatagttgggattttaaattactt
gcagagcgtacattatcaattccatgttcaacagttgaattggttattgataagattcaa
tattcaatttcaattacaaactatcatgaagttttcttaaatactgaaaaaacttcttca
aattcaacttcattagatagaccatggagtaattcaatatcaaaagataattttcatcgt
ggtaatacttcaaatttaccatttttacctggcggtataaaatcacctaataacaatagt
actaatagtactaataataataatcaaacaccaattgattgggtacaattttggcattca
aaatcattattagttaaaccacctggtttagataatggtattttagattttaatgaaaat
attaataaacaagataacaaacaacaacaacaacaacaacaacaacaacaacaacaacaa
caacaacaacaacaacaacaagaaaaggaaaaagaagaagaagaagaagttaatttaaga
tatacattaaaagatttagaaagagaaattgaagaagaaagaaagagagaagaagctgag
gaagctgaagtttatgaagatgatgatcaagaagatgatttagatattgaagaagaggaa
ttggatgaattggatgatattgaaaaaacaaaggaagaaattgatgatattattaaatca
ccgcctcaaccaacctcatcatcattatcaacttcatcatcatcatcgtcaacaacatta
aaagataaaaataaaattgaaattgaaattgaagaagaaacaaagagaaaagaagaagag
agtaaaaaagagaaacagtgggcatttttggaacagaaagagataacttcaccattatca
gatttaataaccaatccagctatagagtatccatttgatttggattcatttcaaaaacaa
gctatcgttcatatggagcaaggggagtctgtgtttattacagcacatacatcagctggt
aagactgtgattgctgaatatgcaattgcgatggctgcaaagaatatgacgagagcaatc
tatacgtcgccaattaaagcattatcaaatcaaaagtttagagattttaaaaatacattc
aacgatgttggtttgatcactggtgacgtatcaatttcaccctcgagtagttgtttagta
ttgactacagagattttaagatcaatgttatataaaggtgctgatttaattagagatatt
gaatgggtgattttcgatgaggttcattatttaaatgatttagaaaggggtgtggtttgg
gaggaggttatcattatgttaccaccatatgtgaaaatggtgttcttatcagcaacagtt
tcaaatccattagaatttgcacaatggattggtagaactaaacaattaccaatctatgta
attggtacaactaaacgtcctattccattagaacattatattcatacaccttcaaatgaa
ttatttaaaattgtagattcaaatagaaattttttaccatcaggttataattctgcatat
aattcattatataaaacagataataataaaggtggtggaggtggtggtagaggtggtcat
aatcaacaacaacaacaaagaggtggtagtggtaataatataagtggttggtcaaaatta
attaatacattaaaagataaacaacaattaccagttattatattttcatttagtaagaat
aaatgtcaagagtatgctggtagtttaggacaatcggttaatttaactcaaggtaatgaa
aagagtcaaattagagttttcattgaacaatcattaggtagactctgtgaagatgataaa
agtttaccacaaatcttacaaatgaaagaattattagaacgtggtattggtgttcatcat
ggtggtttattaccaatcgtgaaggaattggttgagattttattctcaaagagtttagtc
aaggttttatttgcaacagaaacatttgcaatgggtgtgaatatgcctgctaaaaccgtg
gtttatagtagtactagaaaacatgatggtatcactttcagagatttaataccaggtgag
tatactcaaatgtctggtagagcaggtagaagaggtttggataaagttggtactgtaatc
atcacctattggaaagacataccagaacaagctacaatcgaatcaatgatactcggcact
ccgtcaagattaaacagtcaattccgtctaacttataatatgattttaaatttacttaga
gtaccagatttcaaagttgaagatatgattaaacgatcattttcagaattttcatctcaa
aaagaattaccaggtattgaaaaacaaattgaaaagttacaacaacaacaaaaacaattg
gctcaagtcgattgtatcttgggtgaacctgatattgatcattattataaactattctca
caagcaaagaaatataatcaacaaattcaaaatataattttaaatttaccaaatgataat
catttaagtattggtagagttgtagttttatcaacatcatcaaatattgaaaaagaagtc
aatgatgatgatgatgatgatgatgataataatgatgatgatgaaatatttgaaaatgaa
aaatatacaattggtttaattttagaatgtaaatcaactttgataaagcaatatacaaat
acaaaagttgatagagtatttaagattttctctttaaaattaaagattgaaaatgatatt
gtactttgtgttggtaatgaaattattacatcatcaggtggtaaagaaattatgaaagtt
tgtaatgaaaaattacaattgaaacaaagtgatttgaaatcaattttagcaggtgctgaa
agtggtggtgaaagtgaaattttaataaactcattagagcaacaattattgagattaatt
gaagagtatccattaccattaggtccaaaatcaattgacccaattaaacaattgaaattg
aaagatgttgatttcgtctcaacctatgatcatttacaatcgattgaaaaattaatacca
gagagtaaatgccataaatgtccaagattacatgaccattatgaacaaactgaaaaacgt
tatcaattacaatacgcaattcgtgatgctaaatacacagcatccgatgaaaatttgaaa
ttaatgccacaatttaatatcagattagatattttacacgagttgggttatattgatgat
gagaatactgtcactttgaaaggacgtgtttcaagagagattaacacttgcgaggattta
gttatcactgaattaatctttgaaaatgctttcatcaatttagaaccttcagaagttgta
tcggttttatcttgtttaatattccaagaaaaggatgctgttcaaccttcacttacacca
cgtttagaagaagcaaaacaaaatcttatcaaaactgctgaaaaaacttataaagtagaa
tctgataaaggtttagatgttgtacctgatgataaattagaaacaactcttaaatttggt
cttatgcaagttgtgtacgaatgggctagaggtacacctttcaatgatatttgtacactc
acaaatgttttagaaggttcaatcgttcgtgctatcactagaatcggtgaaacttgtcaa
gaagttagaaatgctgctagagtaatcggtgatactaaattacttcaaaaaatggaagaa
gcaatgagattaattaaaagagatatcgttttcacttcttctttatatgttaattaa
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integrated database retrieval system
