Dictyostelium discoideum (cellular slime mold): DDB_G0277977
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Entry
DDB_G0277977 CDS
T00245
Symbol
xab2
Name
(RefSeq) TPR-like helical domain-containing protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0277977 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0277977 (xab2)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0277977 (xab2)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
DDB_G0277977 (xab2)
Spliceosome [BR:
ddi03041
]
Complex B
Other components
Prp19-related factors
DDB_G0277977 (xab2)
Complex C
DDB_G0277977 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_12
TPR_2
Mad3_BUB1_I
TPR_8
TPR_15
FAM161A_B
Senescence_reg
Motif
Other DBs
NCBI-GeneID:
8621256
NCBI-ProteinID:
XP_642044
dictyBase:
DDB_G0277977
UniProt:
Q54Z08
LinkDB
All DBs
Position
3:88368..91113
Genome browser
AA seq
850 aa
AA seq
DB search
MPSINENEDIINKLKMSTITDDIIIQPSIDDLPYEEDVSKNPYSVNCWLRYLEFKQGSPQ
KQRNYIYERAIRELPRSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDKMP
RIWIEYCEFLMIQEKITLTRKTFDRALIALPVTQHYRIWNEYTKFILKRSIPSLTCIRVY
KRYLKIQPEKVEEYIEYLIKIKEWQEVVNQLIKLLDNVKFKSIKGKSRHDHWLQLCEILS
SYPKQITGVDVDSVIRSGIGKFSDQIGKLWCYLSDYYIQLAQFEKARDIFEEALTSVGTA
RDFSFIWESYTQFEDSLIAAKQEILEEDPSEDNLLEFDIIIERYENLIQRQPLLLNSVML
KQNPNNVQEWLKRVNLYSNPTPNVKMIIQTFTDSIKSIDPQLAKGKLSTIYSTFAHFYEQ
NNKLSQARLIFENSLTVNFKTIDDLSTLYCDYAEMELKHRNYEKAIEILKRGTVSPKKQN
TIIEENEPVQKRLFKSIKIWTFYVDLEESFGTFHNTKSIYEKMIQLKVVTPQIILNFAKY
LEENKYFEDMFKAYEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKV
PPKESIIFYLMYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQ
TREIFSKAIEQLPDQYVRDMCLKFADMEKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTW
SDFEKLHGNEDTFKEMLRIRRSVQASYITQNPTLALLNKLNNKDDKDDKNQQQKQQQQQQ
EKQQQQQQQQQQASTLTKSKPVTVSLPETIQYNKKIENDDEINLDDDEEEEEEEDQLAIK
AFPKTLLKII
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaattaatgaaaatgaagatattattaataaattaaagatgtcaacgataaca
gatgatattattattcaaccaagtattgatgatttaccatatgaagaagatgtttcaaag
aatccatactctgttaattgttggttaagatatttagagtttaaacaaggttcaccacaa
aaacaaagaaattatatatatgaaagagccattagagaattaccaagaagttataaaatt
tggcatcaatatctattagaaagaactttagcaattagaggtaaatgtattttagaaaat
tcatttgaggctgtaaatacattatttgaaagatctttagtatttttagataagatgcca
agaatttggattgaatattgcgaatttttaatgatacaagaaaagataacattaactaga
aaaacatttgatagagcattaatagcattaccagttacacaacattatagaatttggaat
gaatatactaaattcatattgaagagatctataccatcattaacatgtattagagtttat
aagagatacttaaagattcaaccagagaaagttgaagagtatattgaatatttaataaag
attaaagagtggcaagaagttgtcaatcaattaattaaactattggataatgttaaattt
aaatcgattaaaggtaagagtcgtcatgatcattggttacaactttgtgaaattctatca
tcatatccaaaacagattacaggtgtagatgtagattcagtgattagaagtggtattggc
aaattcagtgatcaaattggtaaactttggtgttatctatcagattattacattcaattg
gcacaatttgaaaaggcaagagacattttcgaagaggcattaacatcggttggaacagca
agagatttcagttttatttgggaatcctatacacaatttgaggattcattaatcgcagca
aaacaagagatactagaagaggatccatccgaagataatctattggaatttgatattatc
attgaacgttatgaaaatttaattcaacgtcaacctttattattgaattctgtaatgtta
aaacaaaatccaaataatgttcaagaatggttaaaacgtgttaacctatactctaatcca
actccaaatgttaaaatgatcattcaaacttttactgattcaattaaatcaattgatcca
caacttgcaaaaggtaaactttcaactatctattcaacttttgctcatttctatgaacaa
aataataaattatctcaagctcgtttaatatttgaaaattctttaactgtaaattttaaa
acaattgatgatttatcaacattatattgtgattatgctgaaatggaattaaaacataga
aattatgaaaaagcaattgaaattttaaaaagaggtacagtttcaccaaaaaaacaaaat
acaataattgaagagaatgaaccagttcaaaagagattatttaaatcaattaaaatttgg
acattttatgttgatttagaagaatcatttggaacttttcataatacaaaatcaatttat
gaaaagatgattcaattaaaagtggttacaccacaaattattttaaactttgcaaagtat
ttagaagagaataaatattttgaagatatgtttaaagcttatgaacatggtgtacaatta
ttcctatttccacatgttcaagatatttggatcacttatttaaccaaattcattcaaaga
tatgccggtatgaaattggagcgtactcgtgacctattcgaacaggttctatcaaaagta
ccaccaaaagaatcgattatcttttatttaatgtatgcaaactttgaagaacaatatggt
ttagcgcgtcattcaatggctgtctatgatcgtgcagctaaatctgtcgataaagaagat
agattcaaaatgtacttgttatatattcatcgtgcttcagaattctttggtgttaaccaa
actcgtgaaatcttttcaaaagcaatcgaacaattaccagatcaatacgttcgtgatatg
tgtcttaaattcgctgatatggaaaagaaatatggtgaaattgatcgtgctcgttctatc
tacattcatggttctcaattctctgatccaagaacttcaatgttttattggaatacttgg
agtgatttcgaaaaattacatggtaatgaagatacattcaaagaaatgttaagaattcgt
agatctgttcaagcaagttatattactcaaaatccaactttagctttattaaataaatta
aataataaagatgataaagatgataaaaatcaacaacaaaaacaacaacaacaacaacaa
gaaaaacaacaacaacagcaacagcaacaacaacaagcatctactttaaccaaatcaaaa
cctgtcactgtttcactaccagaaacaattcaatataataagaaaatcgaaaatgatgat
gaaattaatttagatgatgatgaagaagaggaagaggaagaagatcaactagcaattaaa
gcttttccaaaaacattattgaaaataatataa
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