Dictyostelium discoideum (cellular slime mold): DDB_G0278141
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Entry
DDB_G0278141 CDS
T00245
Symbol
vps11
Name
(RefSeq) 7-fold repeat in clathrin and VPS proteins repeat-containing protein
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
DDB_G0278141 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ddi04131
]
DDB_G0278141 (vps11)
Membrane trafficking [BR:
ddi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
DDB_G0278141 (vps11)
Hops complex
DDB_G0278141 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_PEP5_VPS11
PEP5_VPS11_N
VPS11_N
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
zf-C3HC4_2
Beta-prop_HPS5
VPS18_RING_C
zf_RING_Vps8_fungal
zf-RING_5
TPR_11
Beta-prop_EML_2
zf-RING_2
Beta-prop_VPS8
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
8621365
NCBI-ProteinID:
XP_642158
dictyBase:
DDB_G0278141
UniProt:
Q54YP4
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Position
3:complement(343671..346615)
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AA seq
952 aa
AA seq
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MNNWKRFTFFDIETVKQVEKEDGSSLQKLSITCTTSGRGSLIIGDAEGFINFVDREFGIS
SFQAYQQSVSLIYQLKERNFLSSVGHDDIGGAAILKIWNLDKTDKNEQPICVRSIKLEKS
VTVTCFTLLEDLSQIIVGLANGEIIIIRADIFRDKVIKQKIIKVPNDSPITGLGFFPTKS
QQSASAGAVLFVVTTTHVITYHTAHKDQETIIDDEGGDIGSFLMSDDGSPIIARSDAIYF
YNVDGRGPCFGFTGVKTKVLWFRSYLVVIGYDTNNTNALFPGAVVGGQNSIGGLGSQTGS
IGSPSVMVQNTKNNVLNIYDLKNKYIGFTEKFDTVSHICSEWGSIFIFGADGKVFQLEEK
DTQTKLETLFKKHSYQVAIDLAKSQHYDNSAIADVYREYGDRLYAKGDYDGAITQYLCTI
GQLEPSYVIRKFLDAQRIHNLTSYIQALHEKNLATANHTTLLLNCYTKLKDVKKLDHFIM
TDNGTFDVETAIKVCRQGGYFDRALFLASKHSRHDWYLKILLEDLNEYRKALDYIQTLDW
EEADKNLKKYGKQLVSEIPEETTGVLMKLCTNYQPVQAFDSLTALNLNGLTISNQTTTTT
TVTNVTNNNNQNNNSNNNNQNNNNNNNNNIGFKQKSAPEEFIHIFVSQADWLVKFLEYMV
QQGNNESSLIYNTLLELYLRDDVNQTDDERIKRKAKAYEFLTNPKSKFDQDHALILVQVH
NWKEGVLYLYEKLELFNEIIEYHMENNDYDGLIKACKRYGVKDPNLWVRALSFFSTNKQD
CQDEIIEVLTNIDKENLIPPLLVIQILSQNKNTTLAVIKDYISRRLSQETQQIDKDYTQI
RQYADETEKMRHEINELRTNSKIFQQTKCIACLLALDLPSVHFLCQHSFHQRCLGENERE
CPSCAGANKRIQEIKRSQADSANQHDQFFKLLRSSPDGFTTVSEYFGRGILN
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgaataattggaagagattcacattctttgatattgagactgtaaaacaggttgaaaaa
gaagatggatcttcgttacaaaaattatcaattacatgtacaactagtggtcgtggtagt
ttaattattggtgatgcagaaggttttattaattttgtagatagagaatttggaatatca
tcatttcaagcatatcaacaatcagtatcattaatttatcaattaaaggagagaaatttc
ctttcttcagttggtcatgatgatattggtggtgcagcaatcttaaaaatttggaatctt
gataaaactgataagaatgaacaaccaatttgtgttagatctattaaattagagaaatca
gttacagtaacatgtttcacattgttggaagatttgtcacagattatcgttggtttagca
aatggtgaaatcattataattagagcagatatatttagagataaagttattaaacaaaag
attatcaaagtaccaaacgattcgccaattacagggttagggtttttcccaacaaagagt
caacagagtgcgagtgcgggtgcagtgttgtttgtagtgacaacaacacatgttataacc
tatcatacagcacataaagatcaagagacgataatagacgatgaggggggtgacatcggc
tcgtttttaatgagtgacgatgggtcgccaattatagcaagatcagatgcaatttatttc
tataatgtggatggaagaggaccgtgttttggtttcacaggtgtgaagaccaaagtgctg
tggttccgttcctatttggtagtgattggatatgacactaacaacaccaatgccttgttc
ccaggtgctgtggtaggcggacagaatagcataggtgggttgggtagtcagacaggtagt
attgggtcgccatcggttatggtgcaaaacacgaaaaacaatgtattgaatatctatgat
ttaaagaataaatatattggtttcacagagaagttcgatacagtgtctcatatttgcagt
gagtggggctcaattttcatatttggtgccgatggtaaggtgtttcaattggaggagaaa
gacacacaaaccaagttggaaaccttgtttaagaagcattcatatcaagtggctatcgat
ttagcaaagtcacagcattatgacaatagtgccattgcagacgtctatagggagtatggc
gacaggttgtatgccaagggcgactacgacggcgccatcacccaatacctttgcacgatt
ggtcagttggagccatcttatgtcattagaaagttcttggacgctcaaagaattcataat
cttacatcatacattcaagcattgcatgagaagaatttagccacagccaaccacactaca
ctactcttgaattgttataccaaattaaaggatgtaaagaaactcgatcatttcattatg
acagacaatggtacattcgatgtcgagacagcaattaaagtttgtcgtcaaggtggttat
ttcgatcgtgcactctttttagcatcaaaacatagtcgtcacgattggtatcttaaaatt
ctcttggaggatctcaatgaatatagaaaagctttagattacattcaaacacttgattgg
gaagaagctgataaaaatcttaaaaaatatggtaaacaattagtctctgaaattcctgaa
gaaactactggtgtcttaatgaaattatgtacaaattatcaaccagttcaagcttttgat
tctttaacagctttaaatttaaatggtttaacaattagtaatcaaacaacaacaacaaca
actgtaacaaatgtaacaaataataataatcaaaataataatagtaataataataatcaa
aataataataataataataataataatattggatttaaacaaaaatcagcaccagaagaa
tttattcatatttttgtatcacaagcagattggttagttaaatttttagaatatatggta
caacaaggtaataatgaatcatcattaatttataatacattgttagagttatatttgaga
gatgatgtcaatcaaactgatgatgagagaataaagagaaaagcgaaagcatatgaattt
ttaacgaatccaaaatcaaaatttgatcaagatcatgcattgattttagtacaagttcat
aattggaaggagggtgtattgtatttatatgaaaagttagagttattcaatgagatcatc
gagtaccatatggagaataatgattacgatggcttgatcaaagcttgcaagagatatggt
gtaaaagatccaaacctttgggtgagagcattgtcattcttttcaaccaataaacaggat
tgtcaagatgagatcatcgaggtgttgaccaacatcgataaggagaatctcattccacca
ctcttggtaatacaaatcctatcacaaaataagaataccactttggccgtcatcaaagat
tatatctctagaagattgtctcaagaaactcaacaaatcgataaggattacactcaaatc
agacaatacgccgatgagactgaaaagatgagacatgaaatcaacgaacttcgtacaaat
tctaaaattttccaacaaactaaatgtatcgcttgtctattggctttggatttaccaagt
gttcactttttatgtcaacattctttccatcaaagatgtctcggtgagaatgaaagagaa
tgtccttcttgtgctggtgctaataaaagaattcaagagattaaaagatcacaagctgat
tccgccaatcaacatgatcaattctttaaattattaagaagttctcctgatggtttcact
actgtttctgaatattttggtagaggtattttaaattaa
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