Dictyostelium discoideum (cellular slime mold): DDB_G0278285
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Entry
DDB_G0278285 CDS
T00245
Symbol
copB2
Name
(RefSeq) WD40 repeat-containing protein
KO
K17302
coatomer subunit beta'
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ddi04131
]
DDB_G0278285 (copB2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ddi04147
]
DDB_G0278285 (copB2)
Membrane trafficking [BR:
ddi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
DDB_G0278285 (copB2)
Exosome [BR:
ddi04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
DDB_G0278285 (copB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_2nd
Beta-prop_SPT8
DUF2981
Mucin
SWI-SNF_Ssr4_C
Motif
Other DBs
NCBI-GeneID:
8621473
NCBI-ProteinID:
XP_642264
dictyBase:
DDB_G0278285
UniProt:
Q54YD8
LinkDB
All DBs
Position
3:complement(618891..622611)
Genome browser
AA seq
1005 aa
AA seq
DB search
MPLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNP
VRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADYIRCIIVHPTLPYILSSSD
DMFIKLWDYEKGWSNTQVFEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHF
TLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQSKTCVQTLEGHSNNVSVVCYHP
ELPLILSGSEDGTVKLWHSSTYRLERTLNYGMGFVWSMNFLRGSNFIGLGYDDGTVVLKI
GKNKPPVSMDQGGKVIYAKHNEIRISNISSTLEQEVQDGEKLSLQSKDLGNCEVFPQSLQ
HNSNGRFVSVCGDGEFIIYTALAWRNKSFGNALEFVWAEDSGQYAVRESTSRIKIFKNFK
ETHSFKPSFSAEGIFGGSLLGVKSNDTLCFYSWDSADIIRRIEKTSPKNIFWSENGDYLA
IVTDKSTFILRYYKDTVQKYIESGQPIGELGIENAFDVVHEIEDTIGTGLWVGDCFIYIN
RSSKLNYCVGTEVVTISHLEKHMYLLKYLPQSGRLYLSDKNLNIVSYKLHISVISYQTSI
LRGDLEGAERILPKIPQDQRNSIAHFLESQGYKEKALEVSTDLDHRFELAIQLENLDVAH
EIALKSDSETKFKHLGDLALSIGEIKLAENCLKKAEDLPGLLLLYTSTGDIEGMKMLAKL
SEEKGQTNISFICNLLLPNSLLNCLNTLCASGDYSEAAFMARTYLPSMVPDMVEKWKESL
KSTSSKASDALSNPIDFPNLFPQYDLSIKAEKYFESLRSQPKSSFDYLKNATAQSLSKKQ
RNLLEEIESVSQQDYDKVLSQLQHFSLHSGISDITTTTTNTNNNTNNTNNNNTASLLDDL
DFTSTTTTTTTTTNTNTTQKVASPLSSPSPIRKNDSIASPQKQQQQQQDINITAPPLIDP
SPVDHDLVLEPTPIINTVSPTKTSPTADLSFLDNIPVDHDEEDEF
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgcctttacgtttagatattaagaaaaaattatcaacaagatcagatagagttaaatct
gttgatattcacccaacagaaccatggattttagcaagtttatatgatggtaatgtttat
atttggaattatgaaactcaaaatatggtaaaatcatttgaagtttcaccaaataatcca
gttagaacagcaagattcattgcaaagaaacaatggatagttacaggtagtgatgataca
tatattagagtttataattataatacaatggaaaagataaaatcatttgaagcacatgcc
gattatattagatgtattatagttcatccaacattaccatatatattatcatcatcggat
gatatgtttataaagttatgggattatgaaaagggatggagtaacactcaagtctttgaa
ggacattcacattacgtcatgtcgattgcatggaatccaaaggataccaatcaatttgca
accgcatcattggataaaactgtgaaagtgtggagtataaactcaccacatcctcacttt
acattggagggacacgaaaagggtatcaacagtgtcgagtatttctctggcggtgaaaag
ccatacttgataagcggtgccgacgataagctagtgaaaatttgggattaccaatcaaag
acttgcgtccagacattggagggccactcaaacaacgtctcggtggtgtgctaccacccc
gagctccccttgatcctcagcggcagtgaagatggcaccgtgaagctctggcactccagc
acctaccgtttggagaggacactcaactatggcatgggtttcgtttggtcaatgaacttt
ttacgtggctccaacttcattgggttgggctacgatgacggtacagtggtgttgaagatt
ggtaagaacaaaccacccgtttcaatggaccaaggtggtaaggtaatctacgcaaaacac
aatgagattagaatctcaaacatctcctccacattggagcaagaggtacaagatggtgaa
aagttgtcactccaatccaaagatcttggcaattgcgaagtgttccctcaaagtttacaa
cacaactccaatggtagattcgttagtgtctgtggtgatggtgaattcatcatttacacc
gcgctagcttggagaaataaatcatttggtaatgcattggaatttgtttgggcagaagat
tcaggtcaatacgctgtacgtgaatctacatctcgtattaaaatctttaaaaactttaaa
gaaactcatagttttaaaccatctttctctgctgaaggtatctttggtggttctttactt
ggtgtaaaatcaaatgatacactttgtttctatagttgggattctgctgatattattcgt
agaattgaaaaaacttcaccaaaaaatatcttttggtcagaaaatggtgattatttagca
attgtcacagataaatcaacattcattcttagatattataaagatacagttcaaaaatat
attgaaagtggtcaaccaattggtgaattaggtattgagaatgcttttgatgttgtacat
gaaattgaagataccattggtactggtctttgggttggtgattgtttcatctatataaat
agaagtagtaaattaaactattgtgttggtactgaagttgttacaatttcacatttagag
aaacatatgtatttacttaaatatttaccacaaagtggtcgtttatatttatctgataag
aatttaaatattgtttcatataaattacatatttcagttattagctatcaaacatcaatt
ttaagaggtgatttagaaggtgcagaaagaattttaccaaagataccacaagatcaaaga
aatagtattgcacactttttggaatctcaaggttataaagagaaagcattagaggtttca
actgatcttgatcatagattcgaattagcaattcaattagaaaatcttgatgttgctcat
gaaatcgccttaaaatctgattctgaaactaaatttaaacatttaggtgacttagcttta
tcaattggtgaaattaaattagcagaaaattgtttaaagaaagcagaagatttaccagga
ttattgttattatatacttctacaggtgatattgagggtatgaaaatgttggcaaaattg
tcagaagaaaaaggtcaaactaatattagttttatttgtaatcttttattaccaaattca
ttattgaattgtttgaatacattatgtgcaagtggtgattactcagaggcagcctttatg
gcacgtacctatttaccatcgatggtacctgatatggttgagaaatggaaagagagttta
aagagtacaagctcaaaagcatccgatgcactttcaaatccaatcgatttcccaaattta
ttcccacaatatgatttatcaattaaagcagagaaatatttcgaatcattaagatctcaa
ccaaaatcatcttttgattatttaaaaaatgctactgcacaatcattatcaaagaaacaa
agaaaccttttagaagagattgaatctgtttctcaacaagattatgataaagttttatca
caattacaacattttagtttacattctggtatttctgatataacaacaacaacaaccaat
acaaataataatacaaataatacaaataataataatacagcatcacttttagatgatcta
gattttacttcaaccaccaccactactacaaccactacaaatacaaatactactcaaaaa
gttgcatcaccactttcatcaccatcaccaattagaaagaatgattcaattgcttctcca
caaaaacaacaacaacaacaacaagatattaatataactgcaccaccactcattgatcca
agtccagttgatcatgatttagttttagaaccaactccaattattaatactgtatcacca
actaaaacttctccaactgccgatctctcatttttagataatataccagtcgatcatgat
gaagaggatgaattttaa
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