Dictyostelium discoideum (cellular slime mold): DDB_G0278769
Help
Entry
DDB_G0278769 CDS
T00245
Symbol
cstf1
Name
(RefSeq) WD40 repeat-containing protein
KO
K14406
cleavage stimulation factor subunit 1
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DDB_G0278769 (cstf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0278769 (cstf1)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
DDB_G0278769 (cstf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_1st
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
RMC1_N
Beta-prop_WDR75_2nd
Cytochrom_D1
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
CSTF1_dimer
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_WDR41
Beta-prop_Nup120_160
Beta-prop_NWD2_C
SR-25
Motif
Other DBs
NCBI-GeneID:
8621683
NCBI-ProteinID:
XP_641951
dictyBase:
DDB_G0278769
UniProt:
Q54XS9
LinkDB
All DBs
Position
3:<1141749..>1143269
Genome browser
AA seq
506 aa
AA seq
DB search
MKEEQRDLYSLIINQLVHDGYLNEATKISESTMIPCPIKGEASNKLFSLYQSTISGSGGL
GMHSGINRVNSNMDIDDDSSTIGSSGGKNSIEDIINMKECLDFDDPIQQQQLITGSSSTS
TTATTTTTSSSSSSSTSDGTTNTTGIITEKVQQQQLQPNFITKFITTHKNACRCAKFSWD
GKYVATGSSDTSIKLLDVNKMRNYNQTKNETTEDSAPSRPVIRTFYDHTMPINDLDFHPS
APILSSASKDGTIRFYDYKSSLKRSFKYIQDTHGIRSINFHPCGDLILAGTDHQMIRLYN
VNTFQSFTARKINEHHHGPINQVRFSLDGNIFASCSKDNTIKIWDSNNFSLISTLNSPHG
GKEPTTVQISRNQKYLLSCGRDSMIKLWEITSGRLIYSINTGVNQSGGQNKNRISATFNY
TEDYIITNDEQPSVAVVYNSRTKEQVQKLTGHNNTVRYIAASPVENALMTCSLDHRGRFW
TDDTLSLSSNPINNNNNIVNKLDVDI
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagaacaaagagatttatattcattaattataaatcaattagtacatgatgga
tatttgaatgaagcgactaaaattagtgaatctacaatgataccatgtccaattaaagga
gaggcgagtaataaattattttcattgtatcaatctactatatcaggcagtggtggatta
ggtatgcatagtggaattaatagagtaaactcaaatatggatatagatgatgattcaagt
acaataggatcaagtggtggtaaaaattcaattgaagatattataaatatgaaagaatgt
ttagattttgatgatccaatacaacaacaacaattaataactggtagtagcagtacttca
accactgccaccaccaccactactagcagtagtagtagtagtagtacaagtgacggtaca
acaaatacaacaggaattataactgaaaaagtacaacaacaacaattacaaccaaatttt
ataacgaaatttattacaactcataaaaatgcatgtagatgtgcaaaatttagttgggat
ggtaaatatgtagcaacagggtcatcagatacatcaattaaattattagatgttaataag
atgagaaattataatcaaacaaagaatgaaaccactgaagattcagcaccatcaagacca
gtgataagaacattttatgatcatacgatgccaattaatgatttagattttcatccatca
gcacccattctatcatcggcatcaaaagatggtactattagattctacgattataaatca
tcattaaaacgttcatttaaatatatacaagatactcatggtatacgttcaatcaatttt
catccatgtggtgatttaatattggctggcactgatcaccaaatgattagactttacaat
gtaaatacatttcaatcattcacagcaagaaagatcaatgaacatcatcatggtccaatc
aaccaagttaggttctcactggatggtaatatctttgcaagttgttcaaaagataataca
atcaaaatttgggattcaaataattttagtttaatttcaactttaaattcaccccatggt
ggtaaagaaccaactaccgttcaaattagtaggaatcaaaaatacctcttatcatgtggt
cgtgattcaatgattaaactatgggagattacttcaggtcgtttgatctatagtatcaat
acaggtgtaaatcaaagtggtggtcaaaataaaaatagaatctctgcaacctttaattat
actgaagattatatcataacaaatgatgaacaaccctctgtcgctgtggtttacaattca
agaacaaaagaacaagttcaaaaattaactggtcataataatactgttcgttatattgct
gcctcaccagttgaaaatgctttaatgacatgtagtttagatcatagaggtagattttgg
actgatgatactttatctttatcttcaaatccaattaataataataataatattgttaat
aaattagatgttgatatttaa
DBGET
integrated database retrieval system
