Dictyostelium discoideum (cellular slime mold): DDB_G0278821
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Entry
DDB_G0278821 CDS
T00245
Symbol
snrpF
Name
(RefSeq) LSM domain-containing protein
KO
K11098
small nuclear ribonucleoprotein F
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0278821 (snrpF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0278821 (snrpF)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0278821 (snrpF)
03032 DNA replication proteins [BR:
ddi03032
]
DDB_G0278821 (snrpF)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
DDB_G0278821 (snrpF)
Spliceosome [BR:
ddi03041
]
Complex A
U1 snRNP components
Sm proteins
DDB_G0278821 (snrpF)
U2 snRNP components
DDB_G0278821 (snrpF)
Complex B
U1 snRNP components
DDB_G0278821 (snrpF)
U4/U6.U5 tri-snRNP components
DDB_G0278821 (snrpF)
Complex C
U2 snRNP components
DDB_G0278821 (snrpF)
DNA replication proteins [BR:
ddi03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
DDB_G0278821 (snrpF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
8621720
NCBI-ProteinID:
XP_641988
dictyBase:
DDB_G0278821
UniProt:
Q54XP2
LinkDB
All DBs
Position
3:<1243062..>1243559
Genome browser
AA seq
91 aa
AA seq
DB search
MSKIEALAPKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKG
PLGEVLIRCNNVLFVRGIDDEQQQSQQQQQE
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaatagaagcattagcaccaaaaccttttttatatgatttaaaaggtaaaaag
atagcagttcgtttaaagtggggtggtatggaatatcgtggtattttagcatcagttgat
agttatatgaatttacaattagcagcaacagaagaatggatagatggcgcaaataaaggt
ccattaggtgaagttttaattagatgtaataatgttttatttgttagaggaattgatgac
gagcaacaacaatcacaacaacaacaacaagaataa
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