Dictyostelium discoideum (cellular slime mold): DDB_G0281553
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Entry
DDB_G0281553 CDS
T00245
Symbol
helC
Name
(RefSeq) DEAD-box RNA helicase
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03013
Nucleocytoplasmic transport
ddi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
DDB_G0281553 (helC)
03015 mRNA surveillance pathway
DDB_G0281553 (helC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0281553 (helC)
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDB_G0281553 (helC)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
DDB_G0281553 (helC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
FokI_D3
Helicase_C_2
Cas3-like_C_2
Peptidase_S77
DUF1811
Motif
Other DBs
NCBI-GeneID:
8623244
NCBI-ProteinID:
XP_640633
dictyBase:
DDB_G0281553
UniProt:
Q54TF8
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All DBs
Position
3:<4949807..>4951339
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AA seq
465 aa
AA seq
DB search
MSEKETNTTSTENKEKEKQEQTNTNSTTESTNNQVDEEYERPGRSEGLDEFGIQLDIQQS
DPNSPLYSVKTFEELGLKPELLKGVYAMGYNKPSKIQEAALPIIIQSPNNLIAQSQSGTG
KTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIKPLLYISEIEVP
KNVTNQVIIGTPGKILENVIKKQLSVKFLKMVVLDEADFIVKMKNVPNQIAMINRLLPSN
VKVCLFSATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSD
IYGFISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSK
VLITTNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYD
QQSTNKLMNISTHLGVPLKELKSSEIESLDGILKGIRNQLTPLNN
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaagaaacaaatacaacatcaacagaaaataaagaaaaagaaaaacaagaa
caaactaatacaaattcaacaacagaatcaacaaataatcaagttgatgaagaatatgaa
agaccaggaagatcagaaggtttagatgaatttggaattcaattagatattcaacaatct
gatccaaattcaccattatattcagtgaaaacatttgaagaattaggattaaaaccagag
ttattaaagggtgtttatgcaatgggttataataaaccatctaaaattcaagaagcagca
ttaccaattattattcaatcaccaaataatttaattgcacaatcacaatcaggtactggt
aaaactgctgcattcacattgggtatgttaaattgtgttgatccatcaatcaatgcacca
caagcaatttgtattagtccaaccaaagaattagcattacaaacttttgaagttatctca
aagattggtcaattttcaaatattaaaccattattatatatatcagagattgaagtacca
aaaaatgttacaaatcaagttattattggtacaccaggtaaaattttagaaaatgtaata
aaaaaacaattatcagttaaatttttaaagatggtagtattggacgaagcagattttatt
gtaaagatgaagaatgtaccaaatcaaattgcaatgattaatagattattaccaagcaat
gtaaaggtttgtttattctctgcaacatttagtatgggagttgaggaattaattaaaaag
atcgttcaagatccatatacaagtataagattaaaaagacaagagttatctgttgaaaag
attcatcaatattttatagattgtggtagtgaagataataaagcattgattctatcagac
atctatggtttcatatcagttggtcagtcaattgtattcgtacatacaattgcaactgca
aaatcggtacaccaaaaaatggttgatgaaggtcattcagtttcattactctatggtaaa
gatttaacaacagaggaacgttttaaacaaattaaagatttcaaagatggtaaatcaaaa
gtattgataacaacaaatgttttagctagaggtattgatattccacaagtttcattggtg
atcaattatgatgtaccattggatgaaatgggtaaacctgacccagttcattatcttcat
cgtattggtagagttggtagattcggtcgttctggtgttgctcttagttttgtttatgat
caacaatcaacaaataaattaatgaatatttcaacccatcttggtgtacctttaaaagaa
ttaaaatcttctgaaattgaatctttagatggtatcttaaaaggtattagaaatcaatta
acaccattaaataattaa
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