Dictyostelium discoideum (cellular slime mold): DDB_G0282235
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Entry
DDB_G0282235 CDS
T00245
Symbol
rfc5
Name
(RefSeq) replication factor C subunit
KO
K10756
replication factor C subunit 3/5
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03030
DNA replication
ddi03410
Base excision repair
ddi03420
Nucleotide excision repair
ddi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDB_G0282235 (rfc5)
03410 Base excision repair
DDB_G0282235 (rfc5)
03420 Nucleotide excision repair
DDB_G0282235 (rfc5)
03430 Mismatch repair
DDB_G0282235 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddi03032
]
DDB_G0282235 (rfc5)
03036 Chromosome and associated proteins [BR:
ddi03036
]
DDB_G0282235 (rfc5)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0282235 (rfc5)
DNA replication proteins [BR:
ddi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
DDB_G0282235 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
DDB_G0282235 (rfc5)
Chromosome and associated proteins [BR:
ddi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
DDB_G0282235 (rfc5)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
DDB_G0282235 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
DDB_G0282235 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RuvB_N
RCF1-5-like_lid
AAA_7
AAA_assoc_2
AAA_14
AAA_22
DUF815
AAA_24
AAA_3
AAA_16
AAA_11
AAA_19
AAA_28
AAA_5
AAA_18
ATPase_2
AAA_30
bpMoxR
nSTAND3
Viral_helicase1
DNAX_ATPase_lid
RNA_helicase
Gp44_lid
ABC_tran
ResIII
AAA_23
NPHP3_N
NB-ARC
Bac_DnaA
SRP54
Mg_chelatase
TsaE
TIP49
AAA_2
FtsK_SpoIIIE
T2SSE
AAA_17
Motif
Other DBs
NCBI-GeneID:
8623477
NCBI-ProteinID:
XP_640301
dictyBase:
DDB_G0282235
UniProt:
Q54ST4
LinkDB
All DBs
Position
3:5553806..5555127
Genome browser
AA seq
347 aa
AA seq
DB search
MEIDMADKTNKFKTDIERKQFESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHL
LFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNT
TVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFS
PLPTPPTEIRLKEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEE
AIYKCTGYPMPSDIELMVDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDL
DNVILCKLLSHLSDIEYNLSIGSSEKLQLGSLVGCFQLSRDDELLHN
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagatatggcagataaaacaaataaatttaaaacagatatagaaagaaaacag
tttgaaagtttaccttgggtagaaaaatatagaccaaagaatttagatgatttaattgca
catgaagatattacacaaacaattacaaaattaatagataataatacattaccacattta
ctattttatggaccaccgggtacaggtaaaacatcaactattcaagcaattgcaagaaaa
ttatatggtgataattactctagaatggtgttagaattaaatgcatctgatgatcgtggt
attgatgttgtcagagaacaaattaagacatttgcaagttcaatgttcttttttaataca
acagtaccatataaattaattattttagatgaagcagattcaatgacaaatattgcacaa
acagcattaagaagagtaattgaaaagtatacaaaaacaactagattttgtatagtttgt
aattatgttattaaaattatacctgctttacaatcaagatgtacaagatttagatttagt
ccattaccaactccaccaactgaaattagattaaaagaaattattgaaaaggaaaatgtt
aaagttgatagtaaagcaatgaatgcagtattagaattaggatgtggtgatatgagaaaa
tgtttaaatatattacaatcagtatcaatgtcttcaatagataacaacattacagaagaa
gcaatctataaatgtacaggttatccaatgccatctgatattgaattgatggttgattgg
ttattaaatagtgattacgaagaagcttttcaaaatattagtgatttaaaaaagaaaaaa
ggtttatcattgaatgatatcatcgcaacacttcaaaaattcgtcgttcaaattgatttg
gataatgttatcctttgtaaattattatctcatttatcagatatcgaatataatctatca
attggttcctctgagaaattacaattaggttctttagttggttgttttcaattgtcaagg
gatgatgaattattacataattaa
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