Dictyostelium discoideum (cellular slime mold): DDB_G0282569
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Entry
DDB_G0282569 CDS
T00245
Symbol
sf3b3
Name
(RefSeq) CPSF domain-containing protein
KO
K12830
splicing factor 3B subunit 3
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0282569 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddi03021
]
DDB_G0282569 (sf3b3)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0282569 (sf3b3)
03036 Chromosome and associated proteins [BR:
ddi03036
]
DDB_G0282569 (sf3b3)
Transcription machinery [BR:
ddi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
DDB_G0282569 (sf3b3)
Spliceosome [BR:
ddi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
DDB_G0282569 (sf3b3)
Complex B
DDB_G0282569 (sf3b3)
Complex C
U2 SnRNP specific factors
DDB_G0282569 (sf3b3)
Chromosome and associated proteins [BR:
ddi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
DDB_G0282569 (sf3b3)
TFTC complex
DDB_G0282569 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
8623669
NCBI-ProteinID:
XP_640132
dictyBase:
DDB_G0282569
UniProt:
Q54SA7
LinkDB
All DBs
Position
3:complement(5947254..5951124)
Genome browser
AA seq
1256 aa
AA seq
DB search
MYLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGI
VRSIIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCRRIVPGQYL
AVDPKGRAFMIGAIEKQKLVYILNRDSSANLTISSPLEAHKSNTIVFSMCGVDVGFDNPI
FATISVDYTEEDSSSGGGGGGSIEEMMDEDIGKKKKLLTYYELDLGLNNVVRKWSDQVDD
SANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHAEVRSRIPRRYGSDPNKGVLIISHSSH
KQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNVNYFDTIVLANCLTVLKNGFLFAASEF
GDHTLYFFKSIGDEEEEGQAKRLEDKDGHLWFTPRNSCGTKMEELKNLEPTSHLSSLSPI
IDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTVPKSTS
PNAIDQTDKYIVVSFVGTTSVLSVGDTIQENHESGILETTTTLLVKSMGDDAIIQVFPTG
FRHIKSDLRINEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASNLIEIIKKDLR
RDIACIEISPIPKGRNMARFIAVSDWEGPIRVLSLDRDNCLGQVSMLDTDKVYIESLSII
EMQLNEMGIETKKSQSQTGQTTTTTTSTSSASSSVTSGGSLFLFVGLKNGVVKRATLDSV
TGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNYINQGKLDIVPLSIEPLENA
SNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIKLNATPKRFIIHPQTSYIIILET
ETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDDQNNNNEIEPFKKLFKPKAGKG
KWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVGCVTDMVLNPKSHK
SAHLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKC
ETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDY
DTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTV
TTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHL
AYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEIRSQKLL
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgtatttatataatttaacattacaaagaccaacatcggtatatcaatcgattagtggt
aatttttcaggtacaaaacaagttgaaatagtattaaatcatggtagatcattagaattg
attagatatgatgaaaatggtaaaatgcaatcagtattatatacagaagtatttggtata
gttagatcaataataccatttcgtttaacaagtggtactaaagattatattatcgtaggt
tcagattctggtcgtgttgtaatcttggaatataattcacaaaagaatcaatttgataaa
attcatcaagaaacttttggtcgttcaggttgtcgtcgtattgtacctggtcaatattta
gcagttgatccaaaaggaagagcttttatgattggtgcaattgaaaaacaaaaattagtt
tatattttaaatagagattcatcagcaaatttaacaatttcatcaccattggaggcacat
aaatcaaatacaattgtattttcaatgtgtggtgttgatgttggatttgataacccaata
tttgcaaccatatcagttgattatacagaggaggatagtagtagtggtggtggtggtggt
ggatcaattgaggagatgatggatgaagatattggaaagaaaaagaaattgttgacttat
tatgaattggatttaggtttaaataatgttgttagaaaatggagtgatcaagttgacgac
agtgcaaacatagtgatgacagtaccaggtggtacagagggaccaggtggtgtattggta
gcatcagaggattatatagtgtatcgtaaccaagatcatgcagaggtgcgttctagaata
ccacgtagatatggtagtgaccccaataaaggagtattgataatctctcattcatcacat
aaacaaaagggaatgttcttctttttagtgcaatcagagcatggagatctttacaagatc
acattggactaccagggtgaccaggtttcagaggtgaatgtaaactatttcgacacgata
gtattggcaaattgtttaaccgtattgaagaacggcttccttttcgctgcatcagaattt
ggtgatcatacattatactttttcaaatcgattggtgacgaggaggaagagggccaagcc
aagagattggaggataaggacggccatctttggttcactcctagaaattcatgtggtact
aaaatggaggagttgaagaatttggagccaacatcacatttatcatcgttgtcacccatt
atcgatttcaaagttttggatttagttagggaagagaaccctcaactctattcattatgt
ggtactggcttgaattcgtcattgaaggtgttacgacatggcctatcggttaccacaatc
accactgccaatttacctggtgtgccaagtggaatttggacagtaccaaaatcaacctca
cccaatgcaatcgaccaaactgataaatatatagttgtatcattcgttggtactacatca
gtgttaagtgttggtgataccattcaagagaatcatgagagtggtatattggagactaca
accacactattagtgaaatcaatgggagacgatgcaattattcaagtgttcccaacaggt
ttccgtcatattaaatccgatttaagaattaatgaatggagagcaccaggcagaaaaacc
attgtacgtgcatcagctaatcaatcacaattggcgattgcattaagtggtggtgaaatc
atttatttcgaattggatcaagcatcaaatttaattgaaatcattaaaaaagatcttaga
agagatatagcatgcattgaaatttcaccaattccaaaaggtagaaatatggcacgtttc
attgcagtatccgattgggaaggtccaattagagttctttcattagatcgtgataattgt
ttaggtcaagtttcaatgttagatactgataaagtttatattgaaagtttatcaattatt
gaaatgcaattaaatgaaatgggtattgaaactaaaaaatcacaatcacaaactggtcaa
accaccacaacaacaacctcaacctcatcagcaagtagttcagtcacaagtggtggatca
ttatttttatttgttggtttaaaaaatggtgttgttaaacgtgcaacattagatagtgtt
acaggtgaattatcagatattagaacaagattattaggtagaaaaccggtgaaattattt
aaagttaaagttagaggttcaaatgcaatgttagcattatcaagtagagtttggttaaat
tatattaatcaaggtaaattagatattgtaccattatcaattgaaccattagagaatgca
tccaatctttcatcggaacaatcagcagagagtattgtagcaacaagtgaaaataaaatc
ataattttctcaattgataaattgggtgatttattcaatcaagaaactattaaattaaat
gcaacaccaaaaagatttataattcatccacaaacaagttatatcataattttagagact
gaaacaaattataatacagataatattgatattgataaaattaatgaacaatctgaaaaa
ttattattagaaaaacaaaaagagttacaacaagaaatggatattgatgatgatgatcaa
aataataataatgaaattgaaccatttaaaaaattatttaaaccaaaagctggtaaaggt
aaatggaaatcttatattaaaattatggatccaattacacatgaatctttagagtcattg
atgttggaagatggtgaggcaggatttagtgtttgtacatgttcatttggtgaaagtggt
gagatatttttagtggttggttgtgtaactgatatggtattaaatccaaagagtcataag
agtgcacatttaaatctttatcgtttcattgatggtggtaagaaattggagttactttat
aagaccgaggtggaggaaccagtttatgcaatggcacagtttcaaggtaaattggtttgt
ggtgttggtaaatcaatacgtatctatgatatgggtaaaaagaaattacttagaaaatgt
gagacaaagaatctaccaaatacaatcgtcaatattcatagtttaggcgacaggttggtg
gttggtgacatccaagagagcattcatttcataaagtataaacgatcagagaatatgtta
tatgtgtttgcagatgatttagcaccacgttggatgacttcatcggttatgttggattat
gatacggttgcgggtgccgataagtttggtaatatctttgtattacgtttaccattacta
atctctgatgaggttgaagaggatccaactggcactaaattgaaatttgaaagtggcact
ttaaacggcgcccctcataaattggaccatatagctaatttctttgttggtgataccgtt
acaactttaaataaaacttcattggtagtcggtggaccagaggttatactatacacaacc
atcagtggtgccattggtgccttaatccccttcacatcaagagaggacgtagatttcttt
tcaacattagaaatgaatatgagatccgattgtctaccattatgcggtcgtgatcatctt
gcctatcgttcctattatttcccagttaaaaatattatcgatggtgacctttgtgaacaa
ttctcaactttaaattatcaaaaacaattatcaatctctgaagaattatcaagatcacct
tctgaagttattaaaaaattagaagaaattagatctcaaaaattattataa
DBGET
integrated database retrieval system
