Dictyostelium discoideum (cellular slime mold): DDB_G0284319
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Entry
DDB_G0284319 CDS
T00245
Symbol
sympk
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DDB_G0284319 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddi03021
]
DDB_G0284319 (sympk)
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0284319 (sympk)
Transcription machinery [BR:
ddi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
DDB_G0284319 (sympk)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
DDB_G0284319 (sympk)
U7-dependent histone pre-mRNA processing factors
DDB_G0284319 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
BLTP1_C
Motif
Other DBs
NCBI-GeneID:
8624500
NCBI-ProteinID:
XP_638671
dictyBase:
DDB_G0284319
UniProt:
Q54PX4
LinkDB
All DBs
Position
4:1741477..1746822
Genome browser
AA seq
1493 aa
AA seq
DB search
MATESSRELMISLLNGANSSDKDRSDLLASSYELIFHKEPILLDEFYNSFVEFALDRSQA
IKKQIIPYIESICKKYPKFLSNSEANLKILLNSDNKAIVKRVILCVTNLIRSTLSFLLQP
QSNSINHEQLINIWNSFNFLRGYIVNLSASTEDDSIKTNAYKMFEILILSFSSPGEYKTT
KKYKSDEEFSLDRVPFDHSIISKQLLQKDCEDYLNILLDAARDLNNMTSQNIMIIVTSLT
TIAKQRFSMISRIVPILCSCPNLIPVFPIVQQESVRHSLKVSLLSIIRIKRKELLSPFIS
DLIQACSKIDSKDAADEAARWFYHDEPDKKKRHNEGGHESHKKKSKVEHVYGVNDNVIEN
NKNIKNNHNNDSNNNNNNNNNFSNNFNNLNNNFNTGFNNNNNNNNNNFNNNNFNEINKNN
NNMYSSNFIEKPGLIIDDETQAKILASIEHLSPEFVRELVIENMSHVPLISLLQGIPFNQ
QTKELFKFVDSYQNKQIKPIHFISPLTQPNPLQSINNTNLPQYPSPPLKPTTTTTTTTTT
TTTTTTTTPQQNSPQNQPTPFILSPPVNKSFKPPPSSQQPSPPILQQQSPPQQPPQQLPP
QIPLQPPQQSTPPIVETQIKVKKEEDSDDEDEEKQLQEEEDEDLFSKEAMEEEEEDDEVD
KIIKKENEQQQLKEKMENSNSISSSLFGGGGGDNSNGKSDVIPSFTPRPTFKAPPLSKEK
QKHVGESALVRIKISEPGVMVCGKHDLWTSLLSRILSIRPDQEELQDQFIKFITQDFKNH
RELALQWLFNELYIAKQITPTTTKNLNPELENNNNNNNNENNENNDNSTTEASTTTNKNK
KEPNMKRYSTLLKKMIKQMRSHFPIKDTTIGSFILDLPFITNQLLHSINCKIVAESQSLI
YTSATWDINKVFSNEHNQIPIANVTASIKDHQIDENGNQIPLTDDDMDAAAASSSPLPID
PKILQDKENEWLPIGLGILRDLIIWRPNVREYCINSLLKFSISNDDSVRSPTINLIANQI
YSKQSATEPIQLFAKEQIIHLIAIKDIEDEMEIQKSKDAAIIYSELMNQDNNIDDNAIKI
EETQSIEDKKKHEEFEKNKQNQKEEQEQPMKLDNLNDDSNVDINTNTTNTTTTTPTTNTT
TTTSTSTSTTTTTTTTTTELEQSIVPKVLTKTRVKEIKKFIETRVSLYFALIIKNHQLLT
DLLQLYPKYDENIQEVVKRLTTCVIKHIGQSSASLLQVISICPTGSEELTLEILNALVLN
EKPSSELVESVKTLLLTNGDIRFLLPVLTGLKKEEVISRLPSFLSMPNKTDTNQFISVLA
SPGSPLSASELLVQIHLTPDSLTMKSMEAIDFCLDMEDIFKQEIVAATINQLMAQAQLPK
LFMRTILKTLQKYPRLKIFIVEILGRLVARQVWKDKTLWDGFIRCTKLAKPESLEVILQL
PPTQFEDAINHEKHRDLKSIIIKHLQSSKENEIRYPKQNLKTLNWEKHSTTSK
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggaatcatcaagagagttaatgatctctttgttgaatggtgcaaatagttca
gataaagatagatccgaccttttagcaagttcatatgaacttattttccataaagaaccg
attctattggatgaattttataatagttttgttgaatttgcattagatcgatcacaagca
atcaaaaaacaaattataccatacatagaatcaatttgtaaaaagtatccaaaattttta
agtaatagcgaagcaaatttgaaaatattattaaatagtgataataaagcaattgtaaaa
agagtaattttatgtgtaacgaatttaattagatcaacattatcatttttattacaacct
caatcaaattcaataaatcatgagcaattaatcaatatttggaattcatttaattttctt
agaggttatattgtaaatttaagtgcgtcaacagaggatgattcaataaaaacaaatgca
tataaaatgtttgaaattttaattttatcattttcatctcctggtgaatataagacaacg
aagaaatataaatctgatgaagaattttcattggatagagtaccatttgatcattctata
atatcaaaacaattattacaaaaagattgcgaagattatttaaatattttattagatgca
gcaagagatttgaataatatgactagccaaaatataatgataattgtaacatcattaacg
acaatagcaaaacaaagattttcaatgatttcaaggattgtaccaatactgtgttcatgt
ccgaatttaataccagtttttccaatagtacaacaagaaagcgttagacattcattaaaa
gtttcattattatcaataattcgtataaagagaaaagaactattatcaccattcatttca
gatttaattcaagcatgttcaaaaattgattcaaaagatgctgctgatgaagctgcaaga
tggttttatcatgatgaacctgataaaaaaaaacgacataacgaaggtggtcatgaatct
cataaaaaaaaatcaaaggttgaacatgtttatggtgttaatgataatgtaatagaaaat
aataaaaacataaaaaataatcataataacgatagtaataataataataacaacaacaat
aattttagtaacaattttaataatttaaataataattttaataccggttttaataataat
aataataataacaataataattttaataacaataattttaatgaaattaataagaataat
aataatatgtacagttcaaactttattgagaaaccaggtttaattattgatgatgaaact
caagcaaagattttagcatctattgaacatcttagtccagaatttgtaagagaacttgtt
attgaaaatatgagtcatgttcctttgattagtttattacaaggaataccgtttaatcaa
caaactaaagagttatttaaatttgtagattcttatcaaaataaacagattaaaccaatt
catttcataagtccattaacacaaccaaatccattacaatctataaacaatacaaattta
cctcaatatccttcaccacctttaaaaccaacaacaacaacaacaacaacaacaacaaca
acaacaacaacaacaacaacaacacctcaacaaaattcaccacaaaatcaaccaacacct
ttcatattatcaccaccagtaaacaaatcttttaaaccaccaccatcatcccaacaacca
tcaccaccaatacttcaacaacaatcaccaccacaacaaccaccacaacaactaccacca
caaatacctctacaaccaccacaacaatcaacaccaccaattgtagaaactcaaattaaa
gttaaaaaggaagaagatagcgatgacgaagatgaagaaaaacaactacaagaagaagaa
gatgaagatttattctcaaaagaagcaatggaagaagaagaagaagatgatgaagttgat
aaaataattaaaaaagaaaatgaacaacaacaattaaaagagaaaatggaaaattcaaat
tctattagttcttcattatttggtggtggtggtggtgataatagtaacggtaagagtgat
gttataccatcatttacaccaagaccaacatttaaagcaccaccactttcaaaagagaaa
caaaaacatgttggggagagtgcattggttagaattaaaatatcagaacctggtgtcatg
gtttgcggtaaacatgatctttggacttcattattatctcgtatactttcaattagaccc
gatcaagaagaattacaagatcaatttataaaatttatcactcaagattttaaaaatcat
agagaattagcgcttcaatggttattcaatgaattatatattgcaaaacaaattacacca
acaacaactaaaaatcttaatcctgaattagaaaataataataataataataataatgaa
aataatgaaaataatgataattcaaccactgaagcatcaacaacaacaaataaaaataaa
aaagaaccaaatatgaaaagatattcaactttattaaaaaaaatgataaaacaaatgaga
agtcatttcccaattaaagatacaactatcggatcatttatattagatttaccatttata
accaatcaattattacattctataaattgtaagattgttgctgaatctcaaagtttaatt
tatacaagtgcaacttgggatattaataaagtattttcaaatgaacataatcaaatacca
attgcaaatgttacagcaagtataaaagatcatcaaattgatgaaaatggtaatcaaata
ccattgacagatgatgatatggacgcagcagcagcatcatcatcaccattacctattgat
ccaaagatattacaagataaagagaatgaatggttaccaattgggttgggtatattgaga
gatttaatcatttggagaccaaatgtacgtgaatattgtataaatagtcttttaaaattt
tcaatttcaaatgatgattcagttcgttcaccaacaattaatttaattgcaaatcaaatc
tattcaaaacaatctgctacagaaccaattcaattatttgcaaaggaacaaatcattcat
ttaattgcaatcaaagatatcgaagatgaaatggaaattcaaaaatcaaaagatgctgcc
atcatctatagtgaattaatgaatcaagataataatatcgatgataatgctattaaaatt
gaagaaactcaatcaattgaagataaaaaaaaacatgaagaatttgaaaaaaataaacaa
aatcaaaaagaagaacaagaacaaccaatgaaacttgataatctaaatgatgattcaaat
gtagatattaataccaacaccaccaacaccaccaccactacccccacaacaaatacaacc
acaacaacatcaacatcgacatcaacaacaacaacaacaacaacaacaacaacagaatta
gaacaatcaatagtaccaaaagttttaactaaaactagagtaaaagaaattaaaaagttt
atagaaacaagagtttcactttattttgcattgattattaaaaatcatcaattattaact
gaccttttacaattatatccaaaatatgatgaaaatattcaagaggttgttaaaagacta
acgacatgtgtaattaaacatattggacaaagtagtgcttcattgttacaagtgatttca
atttgtccaactggatcagaggaattaacacttgaaattttgaatgcattggttttaaat
gaaaaaccatccagtgaattggttgaatctgtaaaaaccttactattgaccaatggcgat
attagattccttttaccagtgctaacgggtttgaagaaagaagaagttatctctagacta
ccatcattcctatcaatgccaaataaaaccgataccaatcaattcattagtgttttagca
tcaccaggctcaccattatccgcttcggaattattagttcaaattcatttgacacctgat
tccttaactatgaaatcaatggaagctatcgatttttgtttagatatggaagatattttc
aaacaagagattgtcgctgccaccataaatcaattgatggctcaggctcagctaccaaag
ttattcatgagaactatcttaaagacccttcaaaaatatccacgtctaaagattttcatc
gttgagattttaggtcgtttagttgctagacaagtttggaaggataaaactttatgggat
ggtttcattcgttgtacaaaattggcaaaaccagaatcactagaggttatacttcaatta
ccaccaactcaattcgaagatgcaatcaatcatgaaaaacatcgtgatctcaaatcaatc
attatcaaacatttacaatcaagtaaagaaaatgaaattagatatccaaaacaaaattta
aaaactttgaattgggaaaaacattcaaccacttcaaaataa
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integrated database retrieval system
