Dictyostelium discoideum (cellular slime mold): DDB_G0285361
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Entry
DDB_G0285361 CDS
T00245
Name
(RefSeq) RNA recognition motif-containing protein RRM
KO
K12881
THO complex subunit 4
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03013
Nucleocytoplasmic transport
ddi03015
mRNA surveillance pathway
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0285361
09122 Translation
03013 Nucleocytoplasmic transport
DDB_G0285361
03015 mRNA surveillance pathway
DDB_G0285361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0285361
03041 Spliceosome [BR:
ddi03041
]
DDB_G0285361
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
DDB_G0285361
TREX complex
DDB_G0285361
Spliceosome [BR:
ddi03041
]
Complex C
Other components
EJC/TREX
DDB_G0285361
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DDB_G0285361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Herpes_capsid
RRM_occluded
RRM_3
RRM_9
Motif
Other DBs
NCBI-GeneID:
8625074
NCBI-ProteinID:
XP_638266
dictyBase:
DDB_G0285361
UniProt:
Q54NB4
LinkDB
All DBs
Position
4:complement(3169327..3170469)
Genome browser
AA seq
327 aa
AA seq
DB search
MEDISLDQYIKNNKSSQSGGRARRFNNTDSPKTFQRRINIRNNFKNESSPVKFTARLDTT
SINGGGGGSSGGGGSGSTKPLRRIPVRSHNTTTTTTTTSSSSSSSSAPPPLKITIQNNTT
TTKKEVRERQDTPSRFDNNNLPRIRITKTVDRNSSLSRPIIRSSRNNFDSRISSGGRSIS
SRYSVDNGSSGSGGSRINIRRNSYDSDHSTGSGPTLFERRNSGGGGYNGPTGKSLQLFTG
SRLNISNLHHAISEADLKVLFDSLGEIKQIKIHYDHSGRSDGTGYVIYSRHNDAMAALKK
YNGAQLDGRTLKITTGPSLQEDVRKNF
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggaggatatttcacttgatcaatatataaaaaataataaatcaagccaaagtggtggt
agagcccgtagatttaataatacagattccccaaaaacttttcaaagaagaataaatatt
agaaataattttaagaatgagtcatcaccagttaaatttacagctagattagatacaaca
tcaataaatggtggtggtggtggtagtagtggtggtggtggcagtggtagtacaaaacca
ttaagaaggataccagttagatctcataatacaaccacaaccactactaccacatcatca
tcatcatcatcatcatcagcaccaccaccattaaagattacaattcaaaacaatacaaca
acaactaaaaaagaggtaagagaaagacaagatactccatcaagatttgataataataat
ttaccaagaattagaattacaaaaactgtagatagaaattcatcattatcaagaccaata
attagatcaagtagaaataattttgatagtcgtatcagtagtggtggtagaagtattagt
agtagatatagtgttgataatggtagtagtggcagtggtggtagtagaattaatattcgt
cgtaattcatatgatagtgatcactcaactggtagtggtccaactctatttgaaagacgt
aatagtggtggtggtggctataatggaccaacaggaaaaagtttacaattatttacaggt
tcaagattaaatatttcaaaccttcatcatgctattagtgaagctgatctcaaggtttta
ttcgattctttaggtgaaattaaacaaattaaaattcattatgatcatagtggtagaagt
gatggtactggttatgtcatctattcaagacacaatgatgcaatggctgccttaaagaaa
tacaatggtgctcaattagatggtagaactttaaaaattacaactggaccatctttacaa
gaggatgtaagaaagaatttttaa
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