Dictyostelium discoideum (cellular slime mold): DDB_G0285961
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Entry
DDB_G0285961 CDS
T00245
Symbol
rfc1
Name
(RefSeq) replication factor C subunit
KO
K10754
replication factor C subunit 1
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03030
DNA replication
ddi03410
Base excision repair
ddi03420
Nucleotide excision repair
ddi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDB_G0285961 (rfc1)
03410 Base excision repair
DDB_G0285961 (rfc1)
03420 Nucleotide excision repair
DDB_G0285961 (rfc1)
03430 Mismatch repair
DDB_G0285961 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddi03032
]
DDB_G0285961 (rfc1)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0285961 (rfc1)
DNA replication proteins [BR:
ddi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
DDB_G0285961 (rfc1)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
DDB_G0285961 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
nSTAND3
RuvB_N
RCF1-5-like_lid
AAA_22
AAA_19
AAA_16
AAA_33
Motif
Other DBs
NCBI-GeneID:
8625362
NCBI-ProteinID:
XP_638011
dictyBase:
DDB_G0285961
UniProt:
Q54MH9
LinkDB
All DBs
Position
4:3845828..3850119
Genome browser
AA seq
1401 aa
AA seq
DB search
MAKKANKEQSPKKTSPTSSQGSTATKKKTKTSEPAGTDIRNFFAVIKPSTSGENVKNDLF
SKAKEDSNKEFSLSDKENDDVKIISNKKDTTNNDKKKPSENKSPKKKEPSKSIDLTSDED
KSSSEEDKKKPSSSSSKKKPSSSSSSLPNKKKSTLKRLKKKRDDSSSSSSSSESDFDSGS
DLDIESIDQKPKTITKKKNLKRKSKPDSSSSSEDETKHQKDKKIKLKTPEKKIEEPEKKV
EIPSSTSSISSSQKKIVYSFEDSEDSDADKPIPPSKKPSAVVVNAPSTKTFEKKKENTDI
PPSPSKTKETTSTTTDTKPIKSPSKSNKSTTPTTTTPITTEKKKIAQLEFESPIVSITAI
DTEKKKDGNKDNKNKEKDKDSSPFDEMEIEESKSKTIMPNNNNNNKSKESSSSTTNSKNN
TSMNDDLIFDDFAFSPIKSGSNKTTPSKSTSSPSKETTPIKTRSKTVESKFDDDSIFDSP
DKKTTTTTASNTKTKTPPSKKDKFNHDIIFEESDTPLNRAIEDSIVKRSLSGLNNIDKDS
KTTTTTTTEKKQKLKSDPFDTETEEETEDEGDEPLYKQQSSSFGSGSINPTATPTTPTKK
PAATSTNATPTKKPNPFMYMNGRPTPPNKGSKPRPQGKENCLRGKVFLVSGVMDCFERDE
MHDIIKRWGGKVAKSAVKLLNYLVSGKDVGEKKLEGAKKVGAKIITEDEFLEMINKTLPK
PVSTTETTHISLPTPTPTPTPTPASSSSSSTTTTTTTTTTTTNSTGIKGPSLPVRSGSGG
SSTGIKGPSLPVRSGSGGTTSSSPPLTFTSSPPTSTTTATTTTTSSPPISMASVIVPKSI
STIPKGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPP
GIGKTSAALLICKQKGFEAIELNASDARSKSEIKRLLSGVSDNQNITKFFGTTNQDTGKD
VQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSSKVTSLRNH
CMDLKLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQMMSRSKR
DYNNDNVTQSLQEKDFDISPFTAAELILREDNSNINKKLDYFFSDFSLVPLIIQENYLKT
RPYGGGSQSKYNDCELISMAADALSDSDQFGRAIGKEMAWNLLPTYGVTSCIIPSGYIRG
SPPMPLSFPSYLGKYSNASKQQRFVRELQLHMRSTSNTFVNRDETRLYYVPMLKHHLIQP
LVQDDNDGIENVINVMDEYGLTEDDRNNIIELSTWGKEDPLKDVKTQVKSAFTRKFRSTS
HAIYDVSLLSSKGSGGGGTNIAEGYEEVEGESQNQIEEEDEETEEKDSLPNLVKKSSVKS
KSDTKPKSTKSKSTTTKSKKK
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaagcaaataaagaacaatcaccaaaaaaaacttcacctacatcatcacaa
ggctcgactgcgacaaagaaaaaaacgaaaacatctgaaccagcaggaactgatattaga
aatttctttgcagtaattaaaccatcaactagtggtgaaaatgttaaaaatgatttattt
agcaaagcaaaagaggatagtaataaagaattttcattgtcagacaaagaaaatgatgat
gttaaaatcattagcaacaaaaaagatacaactaacaatgataaaaagaagccatcagaa
aataaatcacctaaaaagaaagaaccatcaaaatctattgatttaacttctgatgaagat
aaaagttcaagtgaagaagataaaaagaaaccatcttcatcttcttctaaaaagaaacca
tcatcttcatcttcttctttaccaaataaaaaaaaatcaacattaaaaagattaaagaaa
aaaagagatgattcttcatcatcatcatcatcatcagagtcagattttgattcaggttca
gatttagatatagaatcaatagaccaaaaaccaaaaacgataacaaaaaaaaagaattta
aaaagaaaatcaaaaccagattcatcctcgtcaagtgaggatgaaactaaacatcaaaaa
gataagaaaattaaattaaaaacacctgaaaaaaaaatagaagaacctgaaaagaaagta
gaaataccatcatcaacttcatcaatatcatcttctcaaaagaaaattgtttattcattt
gaagattcagaagattcagatgctgataaaccgattccaccttctaaaaaaccttcagca
gtagttgtaaatgcaccctcaacaaaaacatttgaaaagaaaaaagaaaatactgatata
ccaccatcaccatcaaaaacaaaagaaacaacttcaacaactactgatacaaaacccata
aaatcaccaagtaaatcaaataaaagtacaacaccaacaacaacaacaccaataacaaca
gaaaagaaaaaaatagcacaacttgaatttgaatcaccaatagtttcaataacagcaatt
gatacagaaaagaaaaaagatggtaataaagataataaaaataaggaaaaagataaagat
tcatcaccatttgatgaaatggaaattgaggaatcaaaatccaaaaccattatgccaaat
aataataataataataaatcaaaagaatcatcaagttcaactacaaatagtaaaaataat
acatcaatgaatgatgatttaatatttgatgattttgcgttttcaccaattaaatcaggt
tcaaataaaacaactccatctaaatcaacctcttctccatctaaagaaactacaccaatt
aaaacaagatcaaaaactgttgaatctaaatttgatgatgattcaatatttgattctcct
gataaaaaaactacaactaccactgcctctaatacaaaaactaaaacacctccatcaaag
aaagataaattcaatcatgatattattttcgaggaaagtgatacaccacttaatcgtgct
attgaagattctattgtaaagagatcattgtcaggcttaaataatattgataaagattca
aaaactacaacaacaacaacaacagaaaaaaaacaaaaactaaaatcagacccatttgat
actgaaaccgaagaagaaacagaagatgaaggtgatgaaccattatataaacaacaatca
tcatcatttggaagtggttcaattaatccaaccgccacaccaactacaccaacaaagaaa
ccagcagccacatcaacaaatgcaacaccaactaaaaaaccaaatccatttatgtacatg
aatggaagaccaacaccaccaaataaaggttcaaaaccaagacctcagggtaaagaaaat
tgtcttagaggtaaagtatttttggttagtggtgtaatggattgttttgaaagagatgaa
atgcatgatatcattaaaagatggggtggaaaagttgcaaaatctgccgttaaacttttg
aactatttagttagtggtaaagatgttggtgaaaagaagttagagggtgctaaaaaagtt
ggtgctaaaattattactgaagatgaatttttagaaatgatcaataaaactttaccaaaa
ccagtttcgacaactgaaactactcatatttccttaccaactccaactccaactccaact
ccaaccccagcatcatcatcatcatcatcaactactactactactactactactactact
actacaaattccacaggaataaagggaccatcattaccagtgagatctggtagtggtgga
agttcaacaggaattaaaggaccatcattacctgtgagatctggtagtggtggaacgaca
tcatcatcaccacctttaacttttacgtcatcacctccaacttcaacaaccaccgcaaca
acaacaacaacatcatcaccaccaattagtatggcttcggtaattgtgccaaaatcaatt
tcaacaataccaaaaggacatgatattttatgggtagaaaaatatagaccaaaagtaatt
gaagatatagttggtaatccaggtattttccaagagtttggtaaatggttagatcaatgg
aactctacagcaccaagagatgcaagtaaaaagaatgcagttttattatcaggaccacca
ggtattggtaaaacttcagcagctttattaatttgtaagcaaaaaggctttgaagcaatt
gaattgaatgcaagtgatgcaagaagtaaatcagagattaaaagattattatctggtgta
tcagataatcaaaacattaccaaattctttggtacaaccaatcaagacactggtaaagat
gtacaagccaataaaaagattaaaactgccattattttagatgaaatcgatggttcaagt
ggtaactcagatcgtggtggtattgcagagatcattggtttaattaagaaatcaaagatg
ccattcatttgtttatgtaatgattactatagttcaaaggtaacctctttgagaaaccat
tgtatggatttgaaattaaggaaaccaacactcaatcaagtctcctcaagattattggca
attgcaaaacatgaaggtatgaaagtgtcctcctatatgatcgaaaaagtttatacttca
agtcattcagatattagacaatctataaatacccttcaaatgatgtctcgttcaaagaga
gattataacaatgacaatgtcactcaaagccttcaagagaaagatttcgatatctctcca
ttcacagccgctgaattaatccttcgtgaagataatagtaatatcaataagaaattggat
tatttcttctctgatttctctttggtaccattaataattcaagagaactatttaaaaact
agaccttatggtggtggtagtcaatcaaaatataatgattgtgaattgatttcaatggcc
gccgatgcattaagtgattccgatcaatttggaagagccataggtaaggaaatggcttgg
aatttattaccaacttatggtgtcacctcttgtattattccatcgggttatattagaggt
agtccaccaatgccattgtctttcccttcttaccttggtaaatattcaaatgcttcaaaa
caacaacgtttcgttagagaattacaattacatatgagatcaaccagtaatacatttgta
aatcgtgatgaaactagactttactatgtaccaatgttaaaacatcatttaattcaacct
ttggttcaagatgataatgatggtattgaaaatgttatcaatgtaatggatgaatatggt
ttaactgaagatgatagaaataacattatcgaactttcaacatggggtaaagaggatcca
ctaaaagatgttaaaactcaagttaaatctgcattcactagaaaattcagaagtacctcc
catgcaatctatgatgtttcattattatcttcaaagggttctggtggaggaggaacaaat
atcgctgaaggttatgaagaagttgaaggtgaatctcaaaatcaaattgaagaagaagat
gaagaaactgaagaaaaagattctcttccaaatttagttaaaaaatcttcggttaaatca
aaatcagatacaaaaccaaaatcaacaaaatcaaaatcaacaacaacaaaatctaaaaaa
aaataa
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