Dictyostelium discoideum (cellular slime mold): DDB_G0286013
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Entry
DDB_G0286013 CDS
T00245
Symbol
repE
Name
(RefSeq) UV-damaged DNA binding protein1
KO
K10610
DNA damage-binding protein 1
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03420
Nucleotide excision repair
ddi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
DDB_G0286013 (repE)
09124 Replication and repair
03420 Nucleotide excision repair
DDB_G0286013 (repE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ddi04121
]
DDB_G0286013 (repE)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0286013 (repE)
Ubiquitin system [BR:
ddi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
DDB_G0286013 (repE)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
DDB_G0286013 (repE)
TCR (transcription coupled repair) factors
Cul4-CSA complex
DDB_G0286013 (repE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
CNH
Motif
Other DBs
NCBI-GeneID:
8625406
NCBI-ProteinID:
XP_637896
dictyBase:
DDB_G0286013
UniProt:
B0M0P5
LinkDB
All DBs
Position
4:complement(3955941..3959710)
Genome browser
AA seq
1181 aa
AA seq
DB search
MYNFVSTVQKPTSVTHSVTGNFTGPNDKNLIISKCTKIEIFLMDQDGLKPMFDVNIYGRI
SVLKLFSVAGSKQDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIGRPTEAGQLGI
IDPDGRIVALHLYEGLLKLITLDNNNTPNKINNNNNNNNNNNNNNNNNNNNNINNNNFNI
NNNNNNSPIQKNVNNVRLEELQVLDMTFLYGCKVPTIAVLFKDTKDEKHISTYEISSKDT
ELVVGPWSQSNVGVYSSLLVPVPLGGVLVVADNGITYLNGKVTRSVAVSYTKFLAFTRVD
KDGSRFLFGDHFGRLSVLVLIHQQQKVMELKFEQLGRISIPSSISYLDSGVVYIGSSSGD
SQLIRLNTEKDQTTDSYVTYLEAFTNIGPVVDFCVVDAEKQGQAQIVTCSGTYRDGSLRI
IRNGIGIAEQASIELEGIKGIFPINNNNNNNNNNNNNNNNNNNNNSNGITDSKDRYLITS
FIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQITNVSINLIDSNTFKRV
SQWNVEPSRRINLVSTNQDQIVLSIDKSLLYFQINSSNKSIQLVKEIELPHEISCIDISP
FDSFMDTKSQLVSVGLWNDITLRIFKLPTLEEIWKEPLGGEILPRSILMISFDSIDYIFC
SLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLKNTINIFAISDRPTVIYSHNK
KLFYSVVNLKDVTNVTSFNSDGFPNSMAIATTNSLTIGTIDEIQKLHIKTIPLNEEMGRR
IVHLEDHSCYAVITVKNNEGLLGGAQDLCEEDEEVSYIRIYNDQTFELISSYKLDPYEMG
WSITPCKFAGDDVNTYLAVGTSINTPIKSSGRVLLFSLSSSSSSNDKDSLDNNNNNNNNS
GANGKLTLLEEIKFRSSVYFLLSFNGRLIAAVHKRLFSIRYTHSKEKNCKVISSESVHKG
HTMILKLASRGHFILVGDMMKSMSLLVEQSDGSLEQIARNPQPIWIRSVAMINDDYFIGA
EASNNFIVVKKNNDSTNELERELLDSVGHYHIGESINSMRHGSLVRLPDSDQPIIPTILY
ASVNGSIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFID
GDLIETFLDLKYESQLKAVADLGITPDDAFRRIESLMQYIR
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtataattttgtatcaactgttcaaaaaccaacatcagttacacattctgtaactggt
aatttcacaggtcccaatgataaaaatcttataattagtaaatgtacaaagattgaaata
tttttaatggatcaagatggattaaaaccaatgtttgatgttaatatttatggtagaata
tcagtattaaaattattttcagttgctggtagtaaacaggattatttatttatatcaaca
gagagttttaaattttgtatattagcatatgactatgaaaagaaagagattataactaaa
gcatctggtaatgctgaagatacaattggtagaccaaccgaagctggtcaacttggcatt
atagatcctgatggtagaatagttgcattacatctttatgaaggtttattaaaattaatt
accttggataataataatacaccaaataaaataaataataataataataataataacaat
aataataataacaataataataataataataataatattaataataataattttaatatt
aataataataataataattcaccaattcaaaagaatgtaaataatgttagattagaggaa
ttacaagttttagatatgacatttttatatggttgtaaagtaccaacgatagcggtactt
tttaaggatacaaaagatgaaaaacatatatcaacctatgagatatcatcaaaggataca
gaattagtagttggaccatggtcacaatcaaatgttggagtttatagttcattgttagta
cctgtaccattgggtggtgtattggtggtagcagataatggtatcacctatttaaatggt
aaggtcactagatccgtagcagtatcatatacaaagtttttagcattcactagagtggat
aaagatggttctcgattcctctttggtgatcattttggtagattatcagtattggtatta
attcatcaacaacaaaaagtaatggaattgaaatttgaacaattgggtcgtatctcaata
ccatcatcaattagttatttagattctggtgtagtttatattggttcaagttcaggtgat
tctcaattgataagattaaatactgaaaaagatcaaactacagattcatacgtcacctat
ttagaagcatttacaaacattggtccagtcgttgatttctgtgttgttgatgctgaaaaa
caaggtcaagctcaaattgtaacttgttctggtacctatagggatggttcattacgtatc
attagaaatggtattggtattgctgaacaagcatcaatagaattggaaggtataaaaggt
attttcccaattaataataataataataataataataataataataataataataataat
aataataataataatagtaatggtataactgattcaaaagatagatatttaattacatca
tttattgaatgtacaaaggtattatcatttcaaggtgaagagattgaagaaacagaattt
gaaggtttagaatcaaattgttcaacactttattgtggtaccattgataaattgaattta
ttgattcaaattaccaatgtctcaatcaatttaatcgattcaaatacattcaaaagagta
tcacaatggaatgttgaaccatctcgtagaattaatttagtatcaaccaatcaagatcaa
atcgttttatcaattgataaatcattattatatttccaaattaattcatccaacaaatca
attcaattggtaaaggagattgaactacctcatgaaatctcttgtattgatatttcacct
tttgattcatttatggatactaaatctcaattggtctctgttggactttggaatgatatc
actttacgtatcttcaaattaccaacacttgaagagatttggaaagaaccattgggtggt
gaaattttaccaagatcaatattaatgatttcttttgattcaatagattatattttctgt
tcattaggtgatggtcatttatttaaatttcaatttgatttttcaagttttaaattattt
gataaaagaaaattaactttaggtactcaaccaataattttaaaaaaatttaaattaaaa
aatacaattaatatatttgcaatttcagatagaccaacagtaatttatagtcataataag
aaattattttattcagttgtaaatttaaaggatgttacaaatgttacatcatttaattca
gatggattcccaaattcaatggcaattgctacaaccaattcattgacaattggtacaatt
gatgaaattcaaaaacttcatattaaaaccataccattgaatgaagagatgggtagaaga
attgtacatttagaagatcattcatgttatgcagtgataacggtaaagaataatgaaggt
ttattaggtggtgcacaagatttatgtgaagaggatgaagaggtttcatacattcgtatt
tataatgatcaaacatttgaactcatctcctcttataaattggatccatatgaaatgggt
tggtcaattacaccatgtaaatttgctggtgatgatgtaaatacttatttagcagttggt
acttcaattaatacaccaattaaatcaagtggtagagttttattatttagtttatcatca
tcatcatcatcgaatgataaagatagtttagacaataataacaacaataataataatagt
ggtgctaatggtaaattaactttattagaagaaattaaatttagatcaagtgtttatttc
ttattatcatttaatggtagattaattgcagcagtacataaaagattattttcaattaga
tatactcattcaaaggaaaagaattgtaaagttatttcaagtgagagtgtacataaaggt
catactatgattttgaaattagcaagtagaggtcatttcatactcgttggcgatatgatg
aagtcaatgtcattattggttgaacaatctgatggttcgttggaacaaatcgctagaaat
ccacaaccaatttggattagatcagttgcaatgataaatgatgactatttcattggtgct
gaagcaagtaataatttcatcgttgtcaaaaagaataatgattcaactaatgagctagag
agagagctattggatagtgttggtcattatcatattggtgaatcaatcaattcaatgaga
catggttcattagtacgtttaccagattcagatcaaccaattattcctacaatcctttat
gcttctgtcaatggttcaattggtgtagttgcctctatctctgaagaggatttcatcttt
ttctcaaaattacaaaagggtttaaatcaagtagttcgtggtgttggtggtttcagtcat
gaaacttggagagctttctcaaatgatcatcatactattgactctaaaaatttcattgat
ggtgacttaattgaaactttcttggatctcaaatatgaaagtcaattaaaagctgttgct
gatttaggaataactcctgatgatgcatttagaagaattgaatctttaatgcaatatatt
cgttaa
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