KEGG T00245: DDB

Dictyostelium discoideum (cellular slime mold): DDB_G0286261

Entry

DDB_G0286261      CDS       T00245

Name

(RefSeq) RNA recognition motif-containing protein RRM

K12875

apoptotic chromatin condensation inducer in the nucleus

Organism

ddi Dictyostelium discoideum (cellular slime mold)

Pathway

ddi03013

Nucleocytoplasmic transport

ddi03015

mRNA surveillance pathway

ddi03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:ddi00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DDB_G0286261
  09122 Translation
   03013 Nucleocytoplasmic transport
    DDB_G0286261
   03015 mRNA surveillance pathway
    DDB_G0286261
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0286261
   03041 Spliceosome [BR:ddi03041]
    DDB_G0286261
Messenger RNA biogenesis [BR:ddi03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     DDB_G0286261
Spliceosome [BR:ddi03041]
Complex C
  Other components
   EJC/TREX
    DDB_G0286261

SSDB

Motif

Pfam:

RSB_motif SAP RRM_1 Pinin_SDK_memA SR-25

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

dictyBase:

UniProt:

LinkDB

Position

4:4260842..4262107

AA seq 421 aa
MDIDSISKLKVADLKKELENRSIKTNGMLKADLIDKLKEVLFKEQQSQEIKSNTNIENQL
NTDKEKVNRVDKETIGSLERGKEEKETLEKEEKERSEKEEKEKLEKEKLEKERLEKEKIE
KEKIEKEKIEKENQEKQKREDKEMVEKKENEDLNKKRKTENEVKDSSSSNENIQTKKKRI
ENESDNKIKNENTKHDDTIIPPQSSSLNSSSGSGSSGSSSSNNSSDTILISKLVRPFRVD
MIETLMNEYGSVKNYWMNSVKSFCFVTYSTSEEAIKARNSLNGLVWPPLNRSKLIVEFSS
ESESNKAKNRELGILSQSLSSSSSSSSSSSKPTSTSTPVNTTTTLSNLSKQTKLNKNDNN
NNNNNNKNIENKSNKKNIDENFRKTKTNPPIYWCPLTDQEVEEKRIYMNKRRSMNFNRPR
Y

NT seq 1266 nt +upstreamnt +downstreamnt
atggatattgatagtatttcaaaattaaaagttgcagatttaaaaaaagaacttgaaaat
agatcaattaaaaccaatggaatgctaaaggcagatttgattgataaattgaaagaggtt
ttatttaaagaacagcaatcacaagaaataaaatctaatacaaatatagaaaatcaatta
aacacagataaagaaaaagtcaatagagtcgataaagaaaccattggatcattggaaagg
ggaaaagaagaaaaagaaacattagaaaaagaagaaaaggaaagatcagaaaaagaagaa
aaagaaaaattagaaaaagaaaaattagaaaaagaaagattagaaaaagaaaagatagaa
aaagaaaagatagaaaaagaaaagatagaaaaagaaaaccaggaaaaacaaaaaagagag
gataaagagatggtagaaaaaaaagaaaacgaagatttaaataaaaaaagaaaaactgaa
aatgaagtcaaggatagcagcagcagcaatgaaaatatacaaacaaaaaagaaaaggata
gagaatgaaagtgataataaaattaaaaatgaaaatacaaaacatgatgatactataata
ccacctcaatcatcatctctaaacagtagtagtggtagtggtagtagtggtagtagtagt
agtaataatagtagtgatacaattctaattagtaaattagttagaccttttagggtggac
atgatcgagacattgatgaatgaatatggaagtgttaaaaactattggatgaacagtgtg
aaatcattttgtttcgttacttactccacatcagaggaggcgataaaagcaagaaattct
ttaaatggattggtttggcctcctttaaacagatcaaaacttattgttgaattctcctct
gaatctgaatcaaacaaagcaaagaatagagagttaggaatattatctcaatcattatca
tcatcctcttcttcttcttcatcttcttcaaaaccaacatcaacatcaacaccagtaaat
acaacaaccaccctttcaaatttatcgaaacaaaccaaattaaataaaaatgataataat
aataataataacaataataaaaatattgaaaataaaagtaataaaaaaaatattgatgaa
aattttcgaaaaacaaaaaccaatcctccaatttattggtgtcctttaactgatcaagag
gtcgaagaaaagagaatttatatgaataaaagaagatctatgaattttaatcgcccaaga
tattaa

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