Dictyostelium discoideum (cellular slime mold): DDB_G0286803
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Entry
DDB_G0286803 CDS
T00245
Symbol
vps41
Name
(RefSeq) 7-fold repeat in clathrin and VPS proteins repeat-containing protein
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
DDB_G0286803 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ddi04131
]
DDB_G0286803 (vps41)
Membrane trafficking [BR:
ddi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
DDB_G0286803 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_Prp19
zf-RING_Vps41
zf_RING_Vps8
Beta-prop_HPS5
Beta-prop_EML_2
WD40
zf_RING_Vps8_fungal
TFIIA
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
zf-C3H2C3
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
8625717
NCBI-ProteinID:
XP_637577
dictyBase:
DDB_G0286803
UniProt:
Q54LI4
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All DBs
Position
4:complement(4738365..4741726)
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AA seq
1087 aa
AA seq
DB search
MSTRYIDENGDEYEEEFEYEEVEVEVDEDGNEYIIESTPIKSGAFIPNGTNFLDNGSTAK
PIIFDIGYNPPTSHQNDNGQEYDEDENENNNNTNTNTNNNTNANNNTNTNTNLKKQYQQQ
QEQQQQQQQNGFTSPNRTIRNIEYEDSENNAPATTGDEDEDEEIEYEEDEEGKVDDEIEP
ILKYNRLGHGITEILKKDSASCMAIHPKFLVLGTHWGSVTIHDFDGNEIKRYDTQNSTIT
EIVIDPKGDYIASCSQDGKVVINPFDKSGEQFIYNYTRPITAIALDPEFTNKNTRQFVSG
GKQGQLVMNSKGWFRSKETIIHSGEGPIYAIKWSGIFIAWANDQGVKIYDCSTNTRIAHI
PRKEGSPRGELYRCCLCWEKPNQLIIGWAKSVEVIQITEKVDMTTGHTVKIAQIMNQFNT
KYWIGGIAPFAEELVILGYNDATTIEAQDDLSSVSATPKMLTNSGSTNPNTSPNITGAWN
QGRVDGASKPSIHIVSRKTNSSITTDNLSVNGYQHYKATDYRLDYNTDESIFYIVCPKDV
VAAKPRNLDDHLTWLMEKLKYDEALDAVERDIKTIKSLPPTKIREVGERYIDYLLEKKDI
RKAASLCPKICQRDPLLWEKWVYRFLNLGGLQPLCQYIPIGNPSLSCAIYEMFLNHFLQN
DPDSFLKTVTEWSSSLYNIQAIITAVEDKLSRQPNETIMIALAQLYTYDNNMEKTLDIYL
KLKRGNVFELISRYPDLLFNSIQNKIILFIDYNQNEAIKLLVANTDRIPIPVVVSQLKDR
REYLHRYLHTLFLKDAHIASDFHEIQIQLYAQYEPELLLTFLKNSGHYSLEKALEECSKK
QLYEEMVYLLGRIGNAKEALNLILDKLHKIKDAVEFVEQQKDEELWEYLINKSMNNSLYI
SELLENIGSNVDPIKLIRLIPEKMEIEDLRDRLVKILSDYNLQMSLREGCREILKSDCVN
LEEALVDSLRMGRVVEDLTKCATCCQPIILPRPDSSIVLYFCNHTYHSRCLKSNDSTTTT
NPNQPQQQLTQQQKQQLQQQQQQQQLQQQQQQKQQQQGLEVSFSNCPICVQSSQTKISKF
NSRKIGQ
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactagatatattgacgagaatggagatgaatatgaagaggaatttgaatatgaa
gaggtagaagttgaggttgatgaagatggtaatgaatatattatagagagtacaccaata
aagtctggtgcattcataccaaacggtacaaattttttagataatggtagtactgcaaaa
ccaataatattcgatataggttataatccaccaacttcacatcaaaatgataatgggcaa
gaatatgatgaagatgaaaatgaaaataataataatacaaatacaaatacaaataataat
acaaatgcaaataataatacaaatacaaatacaaatttaaaaaaacaatatcaacaacaa
caagaacaacaacaacaacaacaacaaaatggatttacatcaccaaatagaactattaga
aatattgaatatgaagatagtgaaaataatgcaccggcaacaacaggtgatgaagatgaa
gatgaagagattgaatatgaagaggatgaagaaggtaaagttgatgatgaaattgaacca
attttaaaatacaatagattaggacatggtattacagagattttaaaaaaagatagtgca
agttgtatggcaattcatccaaaattcttagtattaggtacacattggggttctgttacc
attcacgattttgatggtaatgaaattaaaagatatgatactcaaaattcaacaatcact
gagattgttattgacccaaaaggtgattatattgcttcttgttcacaagatggtaaagtt
gtaattaatccatttgataaaagtggtgaacaatttatatataattatacaagaccaata
acagctatagcattagatccagaatttacaaataagaatacaagacaatttgtaagtggt
ggtaaacaaggtcaattagtgatgaattcaaaaggttggtttagatcaaaggaaactata
attcattcaggagagggaccaatttatgcaattaaatggagtggtattttcattgcatgg
gctaatgatcaaggtgtaaagatttatgattgttcaactaatactcgtattgcacatata
cctagaaaggaaggatcaccaagaggtgaattgtatagatgttgtttatgttgggagaaa
cctaaccaattgatcattggttgggcaaagagtgtggaggtcattcaaatcactgaaaag
gttgatatgacaacgggccatactgtgaagatcgctcagattatgaatcagttcaataca
aaatattggattggtggtatcgcaccattcgctgaggaattggtcatacttggttacaat
gacgccacaacgatcgaggcccaagatgacctctcgtcagtttcagcaacaccaaaaatg
ttgacaaatagtggttcaaccaatccaaataccagtccgaatattacgggtgcctggaat
caaggtagagtggatggtgcttcaaaaccatcgattcatattgtatcaaggaagaccaat
tcctccattaccactgataatctatcggttaatggctatcaacattataaagcaaccgat
tatagattggattataataccgatgaatcgatattctacattgtttgtccaaaggatgtg
gttgcggctaaaccaagaaatttagatgaccatttaacttggttaatggagaagttaaag
tatgatgaggcattggacgcagttgagcgtgatattaagaccattaaatcactaccacca
acaaagattagggaagtgggtgaaagatatatcgattaccttttggagaagaaggatatt
agaaaagcggcttcgttatgtccaaagatttgccaacgtgatcctttactatgggagaaa
tgggtctatagattcttgaatttgggtggacttcaaccactttgtcaatatattccaatt
ggtaatccatcattaagttgtgcaatctatgagatgtttttaaaccatttccttcagaac
gacccagactcattcttaaagaccgtaacagaatggtcgtcatcattgtataacattcaa
gccattatcactgcagtcgaggataagctttcaagacagcccaacgaaaccattatgatt
gcattggcacaactctacacctacgataacaatatggagaaaactttggatatctactta
aagttgaaacgtggtaatgtctttgaattgatttcacgttatcctgaccttttattcaac
tccattcaaaacaagatcattctattcatagattacaatcaaaacgaagccattaaacta
ttggtggcaaataccgatagaattccaatacccgttgtggttagtcagctaaaagatcgt
agagagtatttacatcgttatcttcatacattgtttttaaaggatgcccatatcgcttcg
gatttccatgaaattcaaattcaattgtacgctcaatatgaacctgaactcttgttgact
ttcctcaaaaatagtggtcactattcattggagaaagctttggaagaatgttcaaaaaaa
caactctacgaagagatggtctatttgttgggtcgtattggtaatgccaaagaggcactc
aatttaattttggataaacttcacaagattaaagatgccgtcgagtttgttgaacaacaa
aaggatgaagaactttgggaatatctcatcaacaaatcaatgaataactcactctacatt
agtgaactactcgaaaatataggttcaaacgttgatccaatcaaattgattcgattgatt
ccagagaaaatggaaattgaagatttacgtgatcgtctagttaagattctctctgattat
aatcttcaaatgtcacttcgtgaaggttgtagagaaattctaaagagtgattgtgtaaat
ttggaagaggcattagttgactctctaagaatgggtagagtggttgaagatcttactaaa
tgtgccacttgttgtcaaccaatcattttaccacgtcctgatagttcaatagttttatat
ttttgtaatcatacttatcatagtagatgtttgaaatctaatgattcaacaactacaacc
aatccaaatcaaccccaacaacaattaactcaacaacaaaaacaacaattacaacaacaa
caacaacaacaacaactacaacaacaacagcaacaaaaacaacaacaacaaggattagaa
gtttcatttagtaattgtccaatttgtgttcaatcttcacaaactaaaatttcaaaattc
aattccagaaagattggtcaataa
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