Dictyostelium discoideum (cellular slime mold): DDB_G0287053
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Entry
DDB_G0287053 CDS
T00245
Symbol
lsm4
Name
(RefSeq) LSM domain-containing protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018
RNA degradation
ddi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DDB_G0287053 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
DDB_G0287053 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0287053 (lsm4)
03041 Spliceosome [BR:
ddi03041
]
DDB_G0287053 (lsm4)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DDB_G0287053 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
DDB_G0287053 (lsm4)
Spliceosome [BR:
ddi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
DDB_G0287053 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Feld-I_B
Motif
Other DBs
NCBI-GeneID:
8625927
NCBI-ProteinID:
XP_637396
dictyBase:
DDB_G0287053
UniProt:
Q54KX4
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Position
4:complement(5235945..5236851)
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AA seq
177 aa
AA seq
DB search
MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY
IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRGRG
DNSYRGGRGGGNNNSGGGDSSPAGRGRGEYRGSSRGGRGDFRGSSRGGRGGNNNSTA
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgttaccactttcattattaagaacaggtcaaggtcaccaaattatggtggaacttaag
aatggcgaaacatataatggacttttagtaaattgcgataattggatgaacataaattta
aaaaatgttattagaacctcaaaagactctgataaattttggaaaattcaatcatgttat
attagaggaaatacaattaaatacatatcggttcctgatgaaattatagatttagtagca
gaagaagaacaaactttaagaactacatatcaacaaagaaatgatagtaatagaggtaga
ggtagaggtgatggtttcgctggtagaggtagaggtgatgcatctggtagaggtagaggt
gataatagttatagaggtggtagaggtggtggtaataataatagtggtggtggcgactca
tcaccagcaggtagaggtagaggtgaatatagaggaagttcaagaggtggtagaggagat
tttagaggtagttcaagaggtggtagaggtggtaataataattcaaccgcttaa
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