KEGG T00245: DDB

Dictyostelium discoideum (cellular slime mold): DDB_G0287053

Entry

DDB_G0287053      CDS       T00245

Symbol

lsm4

Name

(RefSeq) LSM domain-containing protein

K12623

U6 snRNA-associated Sm-like protein LSm4

Organism

ddi Dictyostelium discoideum (cellular slime mold)

Pathway

ddi03018

RNA degradation

ddi03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:ddi00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DDB_G0287053 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DDB_G0287053 (lsm4)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0287053 (lsm4)
   03041 Spliceosome [BR:ddi03041]
    DDB_G0287053 (lsm4)
Messenger RNA biogenesis [BR:ddi03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DDB_G0287053 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     DDB_G0287053 (lsm4)
Spliceosome [BR:ddi03041]
Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    DDB_G0287053 (lsm4)

SSDB

Motif

Pfam:

LSM SM-ATX DUF3885 Feld-I_B

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

dictyBase:

UniProt:

LinkDB

Position

4:complement(5235945..5236851)

AA seq 177 aa
MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY
IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRGRG
DNSYRGGRGGGNNNSGGGDSSPAGRGRGEYRGSSRGGRGDFRGSSRGGRGGNNNSTA

NT seq 534 nt +upstreamnt +downstreamnt
atgttaccactttcattattaagaacaggtcaaggtcaccaaattatggtggaacttaag
aatggcgaaacatataatggacttttagtaaattgcgataattggatgaacataaattta
aaaaatgttattagaacctcaaaagactctgataaattttggaaaattcaatcatgttat
attagaggaaatacaattaaatacatatcggttcctgatgaaattatagatttagtagca
gaagaagaacaaactttaagaactacatatcaacaaagaaatgatagtaatagaggtaga
ggtagaggtgatggtttcgctggtagaggtagaggtgatgcatctggtagaggtagaggt
gataatagttatagaggtggtagaggtggtggtaataataatagtggtggtggcgactca
tcaccagcaggtagaggtagaggtgaatatagaggaagttcaagaggtggtagaggagat
tttagaggtagttcaagaggtggtagaggtggtaataataattcaaccgcttaa

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